Gene annotation
Transcriptome id Sobic.002G281300.1
Synonym Sb02g031420
Functional annotation trafficking protein particle complex subunit, putative, expressed
UniProt C5X6X4
Pfam PF04099
Panther DB PTHR12403
NCBI CDD KOG3444; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0006888; endoplasmic reticulum to Golgi vesicle-mediated transport GO:0005801cis-Golgi network GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT2G20930 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os09g36976.1 : trafficking protein particle complex subunit, putative, expressed
MaizeGDB (Corn) Zm00025a049303 , Zm00025a014470
Brachypodium KQJ91260
Barley HORVU5Hr1G084390.5 , HORVU5Hr1G084390.4
Wheat TraesCS5D02G338900 , TraesCS5A02G334200 , TraesCS5B02G333700
Populus -


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cDNA sequences
Sobic.002G281300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G261400 DUF292 domain containing protein, expressed -
2 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
3 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
5 Sobic.010G205300 secreted salivary protein, putative, expressed -
6 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
7 Sobic.004G194900 expressed protein -
8 Sobic.001G054200 green ripe-like, putative, expressed -
9 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
10 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
11 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
12 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
13 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
14 Sobic.001G085100 expressed protein -
15 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
16 Sobic.007G045600 MSP domain containing protein, expressed -
17 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
18 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
19 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
20 Sobic.008G004400 GIL1, putative, expressed -


Gene co-expression network
sample Sobic002G281300 Sobic002G281300 Sobic003G261400 Sobic003G261400 Sobic002G281300--Sobic003G261400 Sobic006G250900 Sobic006G250900 Sobic002G281300--Sobic006G250900 Sobic003G007500 Sobic003G007500 Sobic002G281300--Sobic003G007500 Sobic001G067900 Sobic001G067900 Sobic002G281300--Sobic001G067900 Sobic010G205300 Sobic010G205300 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic001G054200 Sobic001G054200 Sobic002G281300--Sobic001G054200 Sobic003G349300 Sobic003G349300 Sobic002G281300--Sobic003G349300 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic006G250900--Sobic002G281300 Sobic006G250900--Sobic001G067900 Sobic006G250900--Sobic003G261400 Sobic002G378200 Sobic002G378200 Sobic006G250900--Sobic002G378200 Sobic003G314100 Sobic003G314100 Sobic006G250900--Sobic003G314100 Sobic006G250900--Sobic003G007500 Sobic006G250900--Sobic001G054200 Sobic003G226500 Sobic003G226500 Sobic006G250900--Sobic003G226500 Sobic010G057900 Sobic010G057900 Sobic006G250900--Sobic010G057900 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic010G083700 Sobic010G083700 Sobic003G007500--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic003G007500--Sobic002G281300 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic001G067900--Sobic006G250900 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic001G502200 Sobic001G502200 Sobic010G205300--Sobic001G502200 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic010G205300--Sobic003G261400 Sobic010G205300--Sobic004G194900 Sobic010G205300--Sobic001G067900 Sobic001G388200--Sobic003G349300 Sobic006G232200 Sobic006G232200 Sobic001G388200--Sobic006G232200 Sobic009G135600 Sobic009G135600 Sobic001G388200--Sobic009G135600 Sobic001G388200--Sobic010G083700 Sobic001G388200--Sobic002G281300 Sobic001G388200--Sobic001G054200 Sobic001G388200--Sobic010G000900 Sobic001G314500 Sobic001G314500 Sobic001G388200--Sobic001G314500 Sobic001G388200--Sobic003G261400 Sobic004G194900--Sobic010G205300 Sobic004G194900--Sobic002G281300 Sobic006G044600 Sobic006G044600 Sobic004G194900--Sobic006G044600 Sobic004G194900--Sobic003G349300 Sobic009G225000 Sobic009G225000 Sobic004G194900--Sobic009G225000 Sobic004G310500 Sobic004G310500 Sobic004G194900--Sobic004G310500 Sobic004G194900--Sobic001G458700 Sobic001G085100 Sobic001G085100 Sobic004G194900--Sobic001G085100 Sobic005G111900 Sobic005G111900 Sobic004G194900--Sobic005G111900 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic003G349300--Sobic010G205300 Sobic001G294900 Sobic001G294900 Sobic003G349300--Sobic001G294900 Sobic003G349300--Sobic009G135600 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic003G349300--Sobic001G283200 Sobic003G349300--Sobic003G261400 Sobic003G349300--Sobic007G168600
Octagon: transcription factors


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