Gene annotation
Transcriptome id Sobic.010G193800.3,Sobic.010G193800.1,Sobic.010G193800.4,Sobic.010G193800.2
Synonym Sb10g024330
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A194YL98 , A0A194YK93 , A0A194YK94
Pfam PF00013 PF00642 PF00642 PF00013
Panther DB PTHR10288 PTHR10288:SF147
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G12130 : KH domain-containing protein / zinc finger (CCCH type) family protein
RAP-DB (Rice) LOC_Os06g41384.1,LOC_Os06g41384.2 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a051533 , Zm00025a042116
Brachypodium KQK17661 , KQK17660
Barley -
Wheat TraesCS7A02G402300 , TraesCS7A02G402300 , TraesCS7B02G302400 , TraesCS7D02G396100 , TraesCS7B02G302400 , TraesCS7D02G396100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G193800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G420700 expressed protein -
2 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
3 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
5 Sobic.006G225300 expressed protein -
6 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
7 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
8 Sobic.004G141700 expressed protein -
9 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
10 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
11 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
12 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
13 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
14 Sobic.004G226800 expressed protein -
15 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
16 Sobic.006G183000 RING zinc finger protein, putative, expressed -
17 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
18 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
19 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
20 Sobic.002G129000 RING zinc finger protein, putative, expressed -


Gene co-expression network
sample Sobic010G193800 Sobic010G193800 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic003G420700--Sobic010G193800 Sobic001G038100 Sobic001G038100 Sobic003G420700--Sobic001G038100 Sobic002G077900 Sobic002G077900 Sobic003G420700--Sobic002G077900 Sobic001G309100 Sobic001G309100 Sobic003G420700--Sobic001G309100 Sobic001G285300 Sobic001G285300 Sobic003G420700--Sobic001G285300 Sobic007G117100 Sobic007G117100 Sobic003G420700--Sobic007G117100 Sobic002G014700 Sobic002G014700 Sobic003G420700--Sobic002G014700 Sobic009G036900 Sobic009G036900 Sobic003G420700--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic003G420700--Sobic003G024800 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic002G256300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic010G168600 Sobic010G168600 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic002G256300--Sobic010G193800 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700 Sobic008G137600 Sobic008G137600 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic001G532100--Sobic010G193800 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic006G225300--Sobic001G294900 Sobic003G201900 Sobic003G201900 Sobic006G225300--Sobic003G201900 Sobic006G225300--Sobic010G193800 Sobic009G083200 Sobic009G083200 Sobic006G225300--Sobic009G083200 Sobic006G225300--Sobic001G439600 Sobic006G225300--Sobic002G256300 Sobic006G225300--Sobic001G532100 Sobic006G225300--Sobic004G104900 Sobic009G135600 Sobic009G135600 Sobic006G225300--Sobic009G135600 Sobic007G203700--Sobic009G246950 Sobic001G529000 Sobic001G529000 Sobic007G203700--Sobic001G529000 Sobic007G203700--Sobic010G193800 Sobic007G203700--Sobic006G263900 Sobic007G203700--Sobic002G256300 Sobic004G300900 Sobic004G300900 Sobic007G203700--Sobic004G300900 Sobic001G054200 Sobic001G054200 Sobic007G203700--Sobic001G054200 Sobic004G060600 Sobic004G060600 Sobic007G203700--Sobic004G060600 Sobic001G078500 Sobic001G078500 Sobic007G203700--Sobic001G078500 Sobic003G124800 Sobic003G124800 Sobic001G439600--Sobic003G124800 Sobic002G129000 Sobic002G129000 Sobic001G439600--Sobic002G129000 Sobic001G439600--Sobic010G083700 Sobic001G439600--Sobic001G294900 Sobic001G439600--Sobic001G136900 Sobic001G439600--Sobic001G054200 Sobic001G439600--Sobic010G168600 Sobic001G439600--Sobic002G256300 Sobic001G439600--Sobic001G529000 Sobic009G232400 Sobic009G232400 Sobic004G141700--Sobic009G232400 Sobic001G007200 Sobic001G007200 Sobic004G141700--Sobic001G007200 Sobic004G141700--Sobic010G193800 Sobic001G402300 Sobic001G402300 Sobic004G141700--Sobic001G402300 Sobic001G226100 Sobic001G226100 Sobic004G141700--Sobic001G226100 Sobic004G141700--Sobic001G054200 Sobic010G018700 Sobic010G018700 Sobic004G141700--Sobic010G018700 Sobic004G141700--Sobic010G083700 Sobic004G141700--Sobic001G439600 Sobic009G246950--Sobic002G256300 Sobic009G246950--Sobic007G203700 Sobic009G246950--Sobic010G168600 Sobic009G246950--Sobic010G083700 Sobic009G246950--Sobic001G054200 Sobic007G186300 Sobic007G186300 Sobic009G246950--Sobic007G186300 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic009G246950--Sobic001G007200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.