Gene annotation
Transcriptome id Sobic.002G129000.1
Synonym Sb02g011130
Functional annotation RING zinc finger protein, putative, expressed
UniProt C5X5S0
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF114
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G11680 : Zinc finger, C3HC4 type (RING finger) family protein
RAP-DB (Rice) LOC_Os07g27950.1 : RING zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a013537 , Zm00025a045877
Brachypodium KQK16370
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G129000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G183000 RING zinc finger protein, putative, expressed -
2 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
3 Sobic.009G050700 importin subunit alpha, putative, expressed -
4 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
7 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
8 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
9 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
10 Sobic.001G078500 expressed protein -
11 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
12 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
13 Sobic.003G261400 DUF292 domain containing protein, expressed -
14 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
15 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
16 Sobic.001G430800 GA17271-PA, putative, expressed -
17 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
18 Sobic.001G085100 expressed protein -
19 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
20 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit


Gene co-expression network
sample Sobic002G129000 Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic002G129000--Sobic006G183000 Sobic001G439600 Sobic001G439600 Sobic002G129000--Sobic001G439600 Sobic009G050700 Sobic009G050700 Sobic002G129000--Sobic009G050700 Sobic001G294900 Sobic001G294900 Sobic002G129000--Sobic001G294900 Sobic002G400000 Sobic002G400000 Sobic002G129000--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic002G129000--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G129000--Sobic001G136900 Sobic006G263900 Sobic006G263900 Sobic002G129000--Sobic006G263900 Sobic003G405700 Sobic003G405700 Sobic002G129000--Sobic003G405700 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic006G183000--Sobic001G136900 Sobic006G183000--Sobic009G050700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic003G124800 Sobic003G124800 Sobic001G439600--Sobic003G124800 Sobic001G439600--Sobic002G129000 Sobic010G083700 Sobic010G083700 Sobic001G439600--Sobic010G083700 Sobic001G439600--Sobic001G294900 Sobic001G439600--Sobic001G136900 Sobic001G054200 Sobic001G054200 Sobic001G439600--Sobic001G054200 Sobic001G439600--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic001G439600--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic001G439600--Sobic001G529000 Sobic009G050700--Sobic002G129000 Sobic009G050700--Sobic006G183000 Sobic009G050700--Sobic003G405700 Sobic006G278700 Sobic006G278700 Sobic009G050700--Sobic006G278700 Sobic006G101700 Sobic006G101700 Sobic009G050700--Sobic006G101700 Sobic004G356900 Sobic004G356900 Sobic009G050700--Sobic004G356900 Sobic006G225300 Sobic006G225300 Sobic009G050700--Sobic006G225300 Sobic003G226500 Sobic003G226500 Sobic009G050700--Sobic003G226500 Sobic001G085100 Sobic001G085100 Sobic009G050700--Sobic001G085100 Sobic008G137600 Sobic008G137600 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic001G294900--Sobic006G225300 Sobic001G294900--Sobic001G439600 Sobic001G294900--Sobic006G183000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic001G294900--Sobic006G109700 Sobic007G168600 Sobic007G168600 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic001G433400 Sobic001G433400 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic004G327300 Sobic004G327300 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic010G000900 Sobic010G000900 Sobic002G400000--Sobic010G000900 Sobic010G168600--Sobic010G083700 Sobic001G078500 Sobic001G078500 Sobic010G168600--Sobic001G078500 Sobic009G246950 Sobic009G246950 Sobic010G168600--Sobic009G246950 Sobic002G352700 Sobic002G352700 Sobic010G168600--Sobic002G352700 Sobic010G168600--Sobic006G263900 Sobic003G007500 Sobic003G007500 Sobic010G168600--Sobic003G007500 Sobic009G171700 Sobic009G171700 Sobic010G168600--Sobic009G171700 Sobic010G168600--Sobic002G256300 Sobic004G104900 Sobic004G104900 Sobic010G168600--Sobic004G104900 Sobic001G136900--Sobic001G439600 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic001G136900--Sobic010G083700 Sobic001G136900--Sobic006G263900 Sobic001G136900--Sobic002G129000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic006G263900--Sobic010G083700 Sobic006G263900--Sobic001G054200 Sobic006G263900--Sobic010G168600 Sobic006G263900--Sobic001G395400 Sobic006G263900--Sobic001G078500 Sobic006G212100 Sobic006G212100 Sobic006G263900--Sobic006G212100 Sobic010G253800 Sobic010G253800 Sobic006G263900--Sobic010G253800 Sobic006G263900--Sobic009G246950 Sobic006G263900--Sobic003G007500 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic003G405700--Sobic006G183000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic003G405700--Sobic009G050700 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600
Octagon: transcription factors


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