Gene annotation
Transcriptome id Sobic.009G050700.1
Synonym IMPA1, AIMPALPHA, IMPA-1, ATKAPALPHA, Sb09g004320, AT-IMP
Functional annotation importin subunit alpha, putative, expressed
UniProt C5Z0J7
Pfam PF16186 PF01749 PF00514
Panther DB PTHR23316 PTHR23316:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008565; obsolete protein transporter activity GO:0006606protein import into nucleus GO:0005737cytoplasm GO:0005634nucleus GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G06720 : importin alpha isoform 1
RAP-DB (Rice) LOC_Os05g06350.1 : importin subunit alpha, putative, expressed
MaizeGDB (Corn) Zm00025a011943 , Zm00025a036911 , Zm00025a043007
Brachypodium KQK07397
Barley HORVU3Hr1G034750.5 , HORVU1Hr1G022750.9 , HORVU1Hr1G022750.8 , HORVU1Hr1G022750.3 , HORVU1Hr1G022750.1 , HORVU1Hr1G022750.4 , HORVU1Hr1G022750.7 , HORVU1Hr1G022750.6 , HORVU1Hr1G022750.5 , HORVU1Hr1G022750.2 , HORVU3Hr1G034750.8 , HORVU3Hr1G034750.9 , HORVU3Hr1G034750.6 , HORVU3Hr1G034750.7 , HORVU3Hr1G034750.4 , HORVU3Hr1G034750.2 , HORVU3Hr1G034750.1 , HORVU1Hr1G022750.12 , HORVU1Hr1G022750.11 , HORVU1Hr1G022750.10
Wheat TraesCS3A02G172000 , TraesCS3A02G172000 , TraesCS1B02G126500 , TraesCS3D02G178500 , TraesCS3D02G178500 , TraesCS1D02G106200 , TraesCS1A02G097400 , TraesCS3B02G202800 , TraesCS3B02G202800 , TraesCS3B02G202800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G050700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G129000 RING zinc finger protein, putative, expressed -
2 Sobic.006G183000 RING zinc finger protein, putative, expressed -
3 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
4 Sobic.006G278700 expressed protein -
5 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
6 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
7 Sobic.006G225300 expressed protein -
8 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
9 Sobic.001G085100 expressed protein -
10 Sobic.007G205000 zinc finger family protein, putative, expressed -
11 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
12 Sobic.001G105500 heat shock protein DnaJ, putative, expressed -
13 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
14 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
15 Sobic.008G004400 GIL1, putative, expressed -
16 Sobic.001G430800 GA17271-PA, putative, expressed -
17 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.009G219000 ANTH/ENTH domain containing protein, putative, expressed -
19 Sobic.001G261456 - -
20 Sobic.004G286500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic009G050700 Sobic009G050700 Sobic002G129000 Sobic002G129000 Sobic009G050700--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic009G050700--Sobic006G183000 Sobic003G405700 Sobic003G405700 Sobic009G050700--Sobic003G405700 Sobic006G278700 Sobic006G278700 Sobic009G050700--Sobic006G278700 Sobic006G101700 Sobic006G101700 Sobic009G050700--Sobic006G101700 Sobic004G356900 Sobic004G356900 Sobic009G050700--Sobic004G356900 Sobic006G225300 Sobic006G225300 Sobic009G050700--Sobic006G225300 Sobic003G226500 Sobic003G226500 Sobic009G050700--Sobic003G226500 Sobic001G085100 Sobic001G085100 Sobic009G050700--Sobic001G085100 Sobic002G129000--Sobic006G183000 Sobic001G439600 Sobic001G439600 Sobic002G129000--Sobic001G439600 Sobic002G129000--Sobic009G050700 Sobic001G294900 Sobic001G294900 Sobic002G129000--Sobic001G294900 Sobic002G400000 Sobic002G400000 Sobic002G129000--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic002G129000--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G129000--Sobic001G136900 Sobic006G263900 Sobic006G263900 Sobic002G129000--Sobic006G263900 Sobic002G129000--Sobic003G405700 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic006G183000--Sobic001G136900 Sobic006G183000--Sobic009G050700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic001G080000 Sobic001G080000 Sobic003G405700--Sobic001G080000 Sobic003G405700--Sobic006G183000 Sobic003G405700--Sobic002G129000 Sobic010G105600 Sobic010G105600 Sobic003G405700--Sobic010G105600 Sobic003G405700--Sobic009G050700 Sobic003G405700--Sobic001G136900 Sobic004G059000 Sobic004G059000 Sobic003G405700--Sobic004G059000 Sobic002G272600 Sobic002G272600 Sobic003G405700--Sobic002G272600 Sobic002G378200 Sobic002G378200 Sobic006G278700--Sobic002G378200 Sobic006G252700 Sobic006G252700 Sobic006G278700--Sobic006G252700 Sobic007G205000 Sobic007G205000 Sobic006G278700--Sobic007G205000 Sobic001G360200 Sobic001G360200 Sobic006G278700--Sobic001G360200 Sobic003G401100 Sobic003G401100 Sobic006G278700--Sobic003G401100 Sobic001G143500 Sobic001G143500 Sobic006G278700--Sobic001G143500 Sobic001G226000 Sobic001G226000 Sobic006G278700--Sobic001G226000 Sobic007G118200 Sobic007G118200 Sobic006G278700--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic006G278700--Sobic008G004400 Sobic004G066200 Sobic004G066200 Sobic006G101700--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic006G101700--Sobic007G166400 Sobic006G101700--Sobic001G085100 Sobic001G080700 Sobic001G080700 Sobic006G101700--Sobic001G080700 Sobic009G222500 Sobic009G222500 Sobic006G101700--Sobic009G222500 Sobic009G165800 Sobic009G165800 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G049700 Sobic006G049700 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic004G356900--Sobic008G004400 Sobic004G226800 Sobic004G226800 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic006G225300--Sobic001G294900 Sobic003G201900 Sobic003G201900 Sobic006G225300--Sobic003G201900 Sobic006G225300--Sobic010G193800 Sobic009G083200 Sobic009G083200 Sobic006G225300--Sobic009G083200 Sobic006G225300--Sobic001G439600 Sobic002G256300 Sobic002G256300 Sobic006G225300--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic006G225300--Sobic001G532100 Sobic004G104900 Sobic004G104900 Sobic006G225300--Sobic004G104900 Sobic009G135600 Sobic009G135600 Sobic006G225300--Sobic009G135600 Sobic003G250500 Sobic003G250500 Sobic003G226500--Sobic003G250500 Sobic003G226500--Sobic004G104900 Sobic003G007500 Sobic003G007500 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic003G226500--Sobic001G136900 Sobic010G083700 Sobic010G083700 Sobic003G226500--Sobic010G083700 Sobic003G226500--Sobic004G226800 Sobic001G512600 Sobic001G512600 Sobic003G226500--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic003G226500--Sobic001G054200 Sobic001G085100--Sobic006G101700 Sobic001G261436 Sobic001G261436 Sobic001G085100--Sobic001G261436 Sobic006G148200 Sobic006G148200 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G206900 Sobic001G206900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic001G085100--Sobic004G066200 Sobic001G091300 Sobic001G091300 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.