Gene annotation
Transcriptome id Sobic.003G226500.1
Synonym ATSGT1B, Sb03g028430, SGT1B, RPR1, EDM1, ETA3
Functional annotation suppressor of G2 allele of SKP1, putative, expressed
UniProt C5XEC3
Pfam PF13414 PF04969 PF05002
Panther DB PTHR22904 PTHR22904:SF344
NCBI CDD KOG1309; Suppressor of G2 allele of skp1
KEGG Orthology K12795; SUGT1, suppressor of G2 allele of SKP1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G11260 : phosphatase-related
RAP-DB (Rice) LOC_Os01g43540.1 : suppressor of G2 allele of SKP1, putative, expressed
MaizeGDB (Corn) Zm00025a038591 , Zm00025a028357
Brachypodium KQK08808
Barley HORVU3Hr1G055920.2 , HORVU3Hr1G055920.8 , HORVU3Hr1G055920.7 , HORVU3Hr1G055920.1 , HORVU3Hr1G055920.3 , HORVU3Hr1G055920.4
Wheat TraesCS3D02G227500 , TraesCS3D02G227500 , TraesCS3D02G227500 , TraesCS3D02G227500 , TraesCS3D02G227500 , TraesCS3B02G255300
Populus -


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cDNA sequences
Sobic.003G226500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
2 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
3 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
5 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
6 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
7 Sobic.004G226800 expressed protein -
8 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
9 Sobic.001G054200 green ripe-like, putative, expressed -
10 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
11 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
12 Sobic.010G251100 - K03257: translation initiation factor 4A
13 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
14 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
15 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
16 Sobic.004G072800 expressed protein -
17 Sobic.009G050700 importin subunit alpha, putative, expressed -
18 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
20 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic003G226500 Sobic003G226500 Sobic003G250500 Sobic003G250500 Sobic003G226500--Sobic003G250500 Sobic004G104900 Sobic004G104900 Sobic003G226500--Sobic004G104900 Sobic003G007500 Sobic003G007500 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic001G136900 Sobic001G136900 Sobic003G226500--Sobic001G136900 Sobic010G083700 Sobic010G083700 Sobic003G226500--Sobic010G083700 Sobic004G226800 Sobic004G226800 Sobic003G226500--Sobic004G226800 Sobic001G512600 Sobic001G512600 Sobic003G226500--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic003G226500--Sobic001G054200 Sobic004G059000 Sobic004G059000 Sobic003G250500--Sobic004G059000 Sobic004G305600 Sobic004G305600 Sobic003G250500--Sobic004G305600 Sobic004G301900 Sobic004G301900 Sobic003G250500--Sobic004G301900 Sobic008G062000 Sobic008G062000 Sobic003G250500--Sobic008G062000 Sobic001G281600 Sobic001G281600 Sobic003G250500--Sobic001G281600 Sobic003G250500--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic003G250500--Sobic004G253000 Sobic003G250500--Sobic001G512600 Sobic001G119300 Sobic001G119300 Sobic003G250500--Sobic001G119300 Sobic002G256300 Sobic002G256300 Sobic004G104900--Sobic002G256300 Sobic004G104900--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic004G104900--Sobic010G168600 Sobic010G018700 Sobic010G018700 Sobic004G104900--Sobic010G018700 Sobic004G104900--Sobic003G007500 Sobic004G066200 Sobic004G066200 Sobic004G104900--Sobic004G066200 Sobic009G228700 Sobic009G228700 Sobic004G104900--Sobic009G228700 Sobic001G007200 Sobic001G007200 Sobic004G104900--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic004G104900--Sobic009G246950 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic003G007500--Sobic010G083700 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic001G051200 Sobic001G051200 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic003G350600--Sobic004G072800 Sobic003G350600--Sobic001G512600 Sobic003G350600--Sobic003G007500 Sobic008G142700 Sobic008G142700 Sobic003G350600--Sobic008G142700 Sobic003G350600--Sobic003G226500 Sobic001G427800 Sobic001G427800 Sobic003G350600--Sobic001G427800 Sobic009G232400 Sobic009G232400 Sobic003G350600--Sobic009G232400 Sobic001G061700 Sobic001G061700 Sobic003G350600--Sobic001G061700 Sobic001G067900 Sobic001G067900 Sobic003G350600--Sobic001G067900 Sobic001G439600 Sobic001G439600 Sobic001G136900--Sobic001G439600 Sobic001G136900--Sobic002G256300 Sobic004G316900 Sobic004G316900 Sobic001G136900--Sobic004G316900 Sobic001G136900--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G136900--Sobic006G263900 Sobic002G129000 Sobic002G129000 Sobic001G136900--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic001G136900--Sobic006G183000 Sobic006G262900 Sobic006G262900 Sobic001G136900--Sobic006G262900 Sobic001G129300 Sobic001G129300 Sobic001G136900--Sobic001G129300 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G253800 Sobic010G253800 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic004G356900 Sobic004G356900 Sobic004G226800--Sobic004G356900 Sobic006G049700 Sobic006G049700 Sobic004G226800--Sobic006G049700 Sobic004G226800--Sobic002G256300 Sobic002G113900 Sobic002G113900 Sobic004G226800--Sobic002G113900 Sobic010G193800 Sobic010G193800 Sobic004G226800--Sobic010G193800 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic002G204000 Sobic002G204000 Sobic004G226800--Sobic002G204000 Sobic004G232800 Sobic004G232800 Sobic004G226800--Sobic004G232800 Sobic001G512600--Sobic003G350600 Sobic001G467000 Sobic001G467000 Sobic001G512600--Sobic001G467000 Sobic001G512600--Sobic008G142700 Sobic001G512600--Sobic003G250500 Sobic004G150400 Sobic004G150400 Sobic001G512600--Sobic004G150400 Sobic001G512600--Sobic003G226500 Sobic001G512600--Sobic004G301900 Sobic003G000800 Sobic003G000800 Sobic001G512600--Sobic003G000800 Sobic001G372000 Sobic001G372000 Sobic001G512600--Sobic001G372000 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800
Octagon: transcription factors


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