Gene annotation
Transcriptome id Sobic.008G137600.1
Synonym SCL30
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5YPZ8 , C6JSF9 , A0A120GUV7
Pfam PF00076
Panther DB PTHR23147 PTHR23147:SF13
NCBI CDD KOG4207; Predicted splicing factor, SR protein superfamily
KEGG Orthology K12900; FUS-interacting serine-arginine-rich protein 1
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G55460 : SC35-like splicing factor 30
RAP-DB (Rice) LOC_Os02g15310.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a004262
Brachypodium -
Barley HORVU4Hr1G003820.16 , HORVU4Hr1G003820.11 , HORVU4Hr1G003820.13 , HORVU4Hr1G058060.5 , HORVU4Hr1G003820.9 , HORVU4Hr1G003820.8 , HORVU4Hr1G003820.3 , HORVU4Hr1G003820.5 , HORVU4Hr1G003820.4 , HORVU4Hr1G003820.6 , HORVU7Hr1G118660.4 , HORVU7Hr1G118660.2 , HORVU7Hr1G118660.1 , HORVU2Hr1G073490.1 , HORVU2Hr1G073490.2 , HORVU4Hr1G003820.10 , HORVU4Hr1G058060.4 , HORVU4Hr1G058060.3 , HORVU4Hr1G058060.2
Wheat TraesCS5D02G093200 , TraesCS5D02G093200 , TraesCS4A02G289300 , TraesCS4A02G289300 , TraesCS4A02G289300 , TraesCS5A02G079000 , TraesCS5A02G079000
Populus -


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cDNA sequences
Sobic.008G137600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
2 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
3 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
5 Sobic.003G273400 glycylpeptide N-tetradecanoyltransferase 1, putative, expressed K00671: glycylpeptide N-tetradecanoyltransferase
6 Sobic.006G109700 UBA and UBX domain-containing protein, putative, expressed K14012: SHP1, UBX1, UBX domain-containing protein 1
7 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
8 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
9 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
10 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
12 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
13 Sobic.010G205300 secreted salivary protein, putative, expressed -
14 Sobic.001G315500 ethylene-responsive element-binding protein, putative, expressed -
15 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
16 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
17 Sobic.002G129000 RING zinc finger protein, putative, expressed -
18 Sobic.010G065400 X0001, putative, expressed -
19 Sobic.006G183000 RING zinc finger protein, putative, expressed -
20 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -


Gene co-expression network
sample Sobic008G137600 Sobic008G137600 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic001G532100--Sobic003G273400 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G529000 Sobic001G529000 Sobic001G402300--Sobic001G529000 Sobic001G402300--Sobic001G285300 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic006G183000 Sobic006G183000 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic001G294900--Sobic006G109700 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic007G176200 Sobic007G176200 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic006G252200 Sobic006G252200 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic003G273400--Sobic008G137600 Sobic003G273400--Sobic001G532100 Sobic001G207500 Sobic001G207500 Sobic003G273400--Sobic001G207500 Sobic002G306400 Sobic002G306400 Sobic003G273400--Sobic002G306400 Sobic003G273400--Sobic001G294900 Sobic003G273400--Sobic002G341800 Sobic003G273400--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic003G273400--Sobic002G268400 Sobic002G280600 Sobic002G280600 Sobic003G273400--Sobic002G280600 Sobic006G109700--Sobic008G137600 Sobic001G444300 Sobic001G444300 Sobic006G109700--Sobic001G444300 Sobic006G109700--Sobic006G183000 Sobic006G109700--Sobic001G294900 Sobic009G168000 Sobic009G168000 Sobic006G109700--Sobic009G168000 Sobic006G109700--Sobic006G211800 Sobic006G231500 Sobic006G231500 Sobic006G109700--Sobic006G231500 Sobic004G348900 Sobic004G348900 Sobic006G109700--Sobic004G348900 Sobic006G109700--Sobic001G502200 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic001G404100--Sobic002G341800 Sobic001G404100--Sobic001G481700 Sobic001G404100--Sobic001G502200 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic001G404100--Sobic006G252200 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic001G502200--Sobic002G428200 Sobic002G078400 Sobic002G078400 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200
Octagon: transcription factors


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