Gene annotation
Transcriptome id Sobic.006G109700.2
Synonym Sb06g019230, PUX4
Functional annotation UBA and UBX domain-containing protein, putative, expressed
UniProt A0A1Z5RD91
Pfam PF00789 PF08059
Panther DB PTHR23333 PTHR23333:SF26
NCBI CDD KOG2086; Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion
KEGG Orthology K14012; SHP1, UBX1, UBX domain-containing protein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G04210 : plant UBX domain containing protein 4
RAP-DB (Rice) LOC_Os04g39040.1 : UBA and UBX domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a011092 , Zm00025a056236
Brachypodium -
Barley HORVU2Hr1G081080.5 , HORVU2Hr1G081080.2 , HORVU2Hr1G081080.1
Wheat TraesCS2B02G346200 , TraesCS2D02G327100 , TraesCS2A02G335700 , TraesCS2A02G335700
Populus -


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cDNA sequences
Sobic.006G109700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
2 Sobic.001G444300 expressed protein -
3 Sobic.006G183000 RING zinc finger protein, putative, expressed -
4 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.009G168000 selT-like protein precursor, putative, expressed -
6 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
7 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
8 Sobic.004G348900 expressed protein -
9 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
10 Sobic.010G205300 secreted salivary protein, putative, expressed -
11 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
12 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
13 Sobic.001G428100 S-RNase-binding protein, putative, expressed K19042: E3 ubiquitin-protein ligase BOI and related proteins
14 Sobic.005G105500 expressed protein -
15 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A
16 Sobic.010G065400 X0001, putative, expressed -
17 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
18 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
19 Sobic.002G129000 RING zinc finger protein, putative, expressed -
20 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1


Gene co-expression network
sample Sobic006G109700 Sobic006G109700 Sobic008G137600 Sobic008G137600 Sobic006G109700--Sobic008G137600 Sobic001G444300 Sobic001G444300 Sobic006G109700--Sobic001G444300 Sobic006G183000 Sobic006G183000 Sobic006G109700--Sobic006G183000 Sobic001G294900 Sobic001G294900 Sobic006G109700--Sobic001G294900 Sobic009G168000 Sobic009G168000 Sobic006G109700--Sobic009G168000 Sobic006G211800 Sobic006G211800 Sobic006G109700--Sobic006G211800 Sobic006G231500 Sobic006G231500 Sobic006G109700--Sobic006G231500 Sobic004G348900 Sobic004G348900 Sobic006G109700--Sobic004G348900 Sobic001G502200 Sobic001G502200 Sobic006G109700--Sobic001G502200 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200 Sobic001G145500 Sobic001G145500 Sobic001G444300--Sobic001G145500 Sobic001G444300--Sobic006G109700 Sobic002G423800 Sobic002G423800 Sobic001G444300--Sobic002G423800 Sobic001G444300--Sobic006G211800 Sobic007G176200 Sobic007G176200 Sobic001G444300--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G444300--Sobic006G252200 Sobic001G444300--Sobic002G428200 Sobic003G104700 Sobic003G104700 Sobic001G444300--Sobic003G104700 Sobic001G444300--Sobic004G348900 Sobic002G129000 Sobic002G129000 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic006G225300 Sobic006G225300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic001G294900--Sobic006G183000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic001G294900--Sobic006G109700 Sobic002G078400 Sobic002G078400 Sobic009G168000--Sobic002G078400 Sobic007G091000 Sobic007G091000 Sobic009G168000--Sobic007G091000 Sobic010G065400 Sobic010G065400 Sobic009G168000--Sobic010G065400 Sobic009G168000--Sobic006G109700 Sobic008G127500 Sobic008G127500 Sobic009G168000--Sobic008G127500 Sobic003G305100 Sobic003G305100 Sobic009G168000--Sobic003G305100 Sobic010G038700 Sobic010G038700 Sobic009G168000--Sobic010G038700 Sobic009G168000--Sobic001G502200 Sobic003G277000 Sobic003G277000 Sobic009G168000--Sobic003G277000 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic005G105500 Sobic005G105500 Sobic006G211800--Sobic005G105500 Sobic009G234400 Sobic009G234400 Sobic006G211800--Sobic009G234400 Sobic006G211800--Sobic001G444300 Sobic006G211800--Sobic001G404100 Sobic009G212300 Sobic009G212300 Sobic006G211800--Sobic009G212300 Sobic006G231500--Sobic003G305100 Sobic006G231500--Sobic009G212300 Sobic009G001900 Sobic009G001900 Sobic006G231500--Sobic009G001900 Sobic004G202100 Sobic004G202100 Sobic006G231500--Sobic004G202100 Sobic004G012800 Sobic004G012800 Sobic006G231500--Sobic004G012800 Sobic006G231500--Sobic006G109700 Sobic006G231500--Sobic007G091000 Sobic002G296200 Sobic002G296200 Sobic006G231500--Sobic002G296200 Sobic001G286300 Sobic001G286300 Sobic006G231500--Sobic001G286300 Sobic001G283200 Sobic001G283200 Sobic004G348900--Sobic001G283200 Sobic003G077900 Sobic003G077900 Sobic004G348900--Sobic003G077900 Sobic004G181900 Sobic004G181900 Sobic004G348900--Sobic004G181900 Sobic004G348900--Sobic001G404100 Sobic001G206900 Sobic001G206900 Sobic004G348900--Sobic001G206900 Sobic001G085100 Sobic001G085100 Sobic004G348900--Sobic001G085100 Sobic002G400000 Sobic002G400000 Sobic004G348900--Sobic002G400000 Sobic004G348900--Sobic001G444300 Sobic001G323000 Sobic001G323000 Sobic004G348900--Sobic001G323000 Sobic001G315500 Sobic001G315500 Sobic001G502200--Sobic001G315500 Sobic007G168600 Sobic007G168600 Sobic001G502200--Sobic007G168600 Sobic004G224900 Sobic004G224900 Sobic001G502200--Sobic004G224900 Sobic003G124800 Sobic003G124800 Sobic001G502200--Sobic003G124800 Sobic001G502200--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G502200--Sobic003G330500 Sobic001G502200--Sobic002G428200 Sobic001G502200--Sobic002G078400 Sobic001G502200--Sobic006G252200
Octagon: transcription factors


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