Gene annotation
Transcriptome id Sobic.006G094600.1
Synonym Sb06g017930
Functional annotation LSM domain containing protein, expressed
UniProt C5Y987
Pfam PF01423
Panther DB PTHR15588 PTHR15588:SF10
NCBI CDD KOG1782; Small Nuclear ribonucleoprotein splicing factor
KEGG Orthology K12620; U6 snRNA-associated Sm-like protein LSm1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G14080 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os04g36810.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056141 , Zm00025a011224
Brachypodium KQJ82803 , KQJ82804 , KQJ99952
Barley HORVU2Hr1G078250.2 , HORVU2Hr1G078250.3 , HORVU2Hr1G078250.1
Wheat TraesCS2A02G313700 , TraesCS2B02G332400 , TraesCS2D02G312100
Populus -


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cDNA sequences
Sobic.006G094600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
2 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
3 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
4 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
5 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
6 Sobic.006G183000 RING zinc finger protein, putative, expressed -
7 Sobic.001G285300 expressed protein -
8 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
9 Sobic.010G205300 secreted salivary protein, putative, expressed -
10 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
12 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
13 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
14 Sobic.001G404200 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed K17790: mitochondrial import inner membrane translocase subunit TIM22
15 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
16 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
17 Sobic.002G268400 expressed protein -
18 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
19 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
20 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''


Gene co-expression network
sample Sobic006G094600 Sobic006G094600 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic006G011000--Sobic002G204000 Sobic006G011000--Sobic008G137600 Sobic001G147100 Sobic001G147100 Sobic006G011000--Sobic001G147100 Sobic006G011000--Sobic006G109700 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic004G164000 Sobic004G164000 Sobic003G131300--Sobic004G164000 Sobic010G197900 Sobic010G197900 Sobic003G131300--Sobic010G197900 Sobic003G131300--Sobic006G094600 Sobic003G131300--Sobic001G126200 Sobic001G035400 Sobic001G035400 Sobic003G131300--Sobic001G035400 Sobic004G344800 Sobic004G344800 Sobic003G131300--Sobic004G344800 Sobic001G036700 Sobic001G036700 Sobic003G131300--Sobic001G036700 Sobic009G001900 Sobic009G001900 Sobic003G131300--Sobic009G001900 Sobic007G019501 Sobic007G019501 Sobic003G131300--Sobic007G019501 Sobic001G294900--Sobic008G137600 Sobic003G349300 Sobic003G349300 Sobic001G294900--Sobic003G349300 Sobic006G225300 Sobic006G225300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic009G135600 Sobic009G135600 Sobic001G294900--Sobic009G135600 Sobic001G294900--Sobic006G109700 Sobic006G222400 Sobic006G222400 Sobic001G126200--Sobic006G222400 Sobic004G224800 Sobic004G224800 Sobic001G126200--Sobic004G224800 Sobic001G126200--Sobic006G094600 Sobic001G126200--Sobic003G131300 Sobic001G126200--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G126200--Sobic010G238700 Sobic001G367000 Sobic001G367000 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic007G192100 Sobic007G192100 Sobic001G126200--Sobic007G192100 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G183000--Sobic006G094600 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic001G285300--Sobic002G044000 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic003G420700 Sobic003G420700 Sobic001G285300--Sobic003G420700 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600 Sobic004G335000 Sobic004G335000 Sobic002G428200--Sobic004G335000 Sobic007G176200 Sobic007G176200 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic006G252200 Sobic006G252200 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic001G010700 Sobic001G010700 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic004G232800 Sobic004G232800 Sobic010G205300--Sobic004G232800 Sobic010G205300--Sobic003G349300 Sobic007G168600 Sobic007G168600 Sobic010G205300--Sobic007G168600 Sobic010G205300--Sobic001G502200 Sobic002G281300 Sobic002G281300 Sobic010G205300--Sobic002G281300 Sobic004G356900 Sobic004G356900 Sobic010G205300--Sobic004G356900 Sobic003G261400 Sobic003G261400 Sobic010G205300--Sobic003G261400 Sobic004G194900 Sobic004G194900 Sobic010G205300--Sobic004G194900 Sobic001G067900 Sobic001G067900 Sobic010G205300--Sobic001G067900
Octagon: transcription factors


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