Gene annotation
Transcriptome id Sobic.007G217400.1
Synonym CSN6A, Sb07g028380
Functional annotation COP9 signalosome complex subunit 6a, putative, expressed
UniProt C5YJ86
Pfam PF01398 PF13012
Panther DB PTHR10540 PTHR10540:SF8
NCBI CDD KOG3050; COP9 signalosome, subunit CSN6
KEGG Orthology K12179; COPS6, COP9 signalosome complex subunit 6
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56280 : COP9 signalosome subunit 6A
RAP-DB (Rice) LOC_Os08g39070.1 : COP9 signalosome complex subunit 6a, putative, expressed
MaizeGDB (Corn) Zm00025a005003 , Zm00025a033751
Brachypodium KQJ98850
Barley HORVU7Hr1G049190.1 , HORVU7Hr1G049190.2 , HORVU7Hr1G049190.3 , HORVU7Hr1G049190.4 , HORVU7Hr1G049190.5
Wheat TraesCS7B02G136800 , TraesCS7B02G136800 , TraesCS7B02G136800 , TraesCS7A02G241300 , TraesCS7A02G241300 , TraesCS7D02G240300 , TraesCS3A02G162000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G217400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
2 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
3 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
4 Sobic.007G165300 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
5 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
6 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
7 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
8 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
9 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
10 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
11 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
12 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
13 Sobic.004G184000 SFT2, putative, expressed -
14 Sobic.006G259900 reticulon domain containing protein, putative, expressed -
15 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
16 Sobic.003G131300 glycosyl hydrolases family 17 protein, putative, expressed -
17 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
18 Sobic.005G105500 expressed protein -
19 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
20 Sobic.001G444300 expressed protein -


Gene co-expression network
sample Sobic007G217400 Sobic007G217400 Sobic001G542900 Sobic001G542900 Sobic007G217400--Sobic001G542900 Sobic009G212300 Sobic009G212300 Sobic007G217400--Sobic009G212300 Sobic006G079900 Sobic006G079900 Sobic007G217400--Sobic006G079900 Sobic007G165300 Sobic007G165300 Sobic007G217400--Sobic007G165300 Sobic008G137600 Sobic008G137600 Sobic007G217400--Sobic008G137600 Sobic009G234400 Sobic009G234400 Sobic007G217400--Sobic009G234400 Sobic009G207200 Sobic009G207200 Sobic007G217400--Sobic009G207200 Sobic002G423800 Sobic002G423800 Sobic007G217400--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic007G217400--Sobic006G211800 Sobic001G542900--Sobic007G217400 Sobic001G542900--Sobic002G423800 Sobic004G335000 Sobic004G335000 Sobic001G542900--Sobic004G335000 Sobic008G110500 Sobic008G110500 Sobic001G542900--Sobic008G110500 Sobic003G043400 Sobic003G043400 Sobic001G542900--Sobic003G043400 Sobic001G444300 Sobic001G444300 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic007G176200 Sobic007G176200 Sobic001G542900--Sobic007G176200 Sobic009G212300--Sobic009G234400 Sobic003G196800 Sobic003G196800 Sobic009G212300--Sobic003G196800 Sobic001G096100 Sobic001G096100 Sobic009G212300--Sobic001G096100 Sobic006G231500 Sobic006G231500 Sobic009G212300--Sobic006G231500 Sobic003G308000 Sobic003G308000 Sobic009G212300--Sobic003G308000 Sobic001G404100 Sobic001G404100 Sobic009G212300--Sobic001G404100 Sobic009G212300--Sobic007G217400 Sobic001G481700 Sobic001G481700 Sobic009G212300--Sobic001G481700 Sobic009G212300--Sobic006G211800 Sobic006G079900--Sobic007G217400 Sobic009G124400 Sobic009G124400 Sobic006G079900--Sobic009G124400 Sobic003G190800 Sobic003G190800 Sobic006G079900--Sobic003G190800 Sobic002G331300 Sobic002G331300 Sobic006G079900--Sobic002G331300 Sobic003G028100 Sobic003G028100 Sobic006G079900--Sobic003G028100 Sobic006G079900--Sobic001G542900 Sobic001G431700 Sobic001G431700 Sobic006G079900--Sobic001G431700 Sobic003G367900 Sobic003G367900 Sobic006G079900--Sobic003G367900 Sobic006G079900--Sobic001G404100 Sobic004G184000 Sobic004G184000 Sobic007G165300--Sobic004G184000 Sobic007G165300--Sobic007G217400 Sobic007G165300--Sobic009G207200 Sobic003G170300 Sobic003G170300 Sobic007G165300--Sobic003G170300 Sobic007G165300--Sobic003G028100 Sobic001G506000 Sobic001G506000 Sobic007G165300--Sobic001G506000 Sobic005G178300 Sobic005G178300 Sobic007G165300--Sobic005G178300 Sobic009G201800 Sobic009G201800 Sobic007G165300--Sobic009G201800 Sobic010G258000 Sobic010G258000 Sobic007G165300--Sobic010G258000 Sobic001G532100 Sobic001G532100 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic009G234400--Sobic009G212300 Sobic009G234400--Sobic006G211800 Sobic009G234400--Sobic002G341800 Sobic009G234400--Sobic001G404100 Sobic005G105500 Sobic005G105500 Sobic009G234400--Sobic005G105500 Sobic009G234400--Sobic003G028100 Sobic009G234400--Sobic001G481700 Sobic009G234400--Sobic006G231500 Sobic002G087000 Sobic002G087000 Sobic009G234400--Sobic002G087000 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic001G061200 Sobic001G061200 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic002G029300 Sobic002G029300 Sobic009G207200--Sobic002G029300 Sobic003G005900 Sobic003G005900 Sobic009G207200--Sobic003G005900 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic004G075200 Sobic004G075200 Sobic009G207200--Sobic004G075200 Sobic007G022700 Sobic007G022700 Sobic009G207200--Sobic007G022700 Sobic002G423800--Sobic003G043400 Sobic002G423800--Sobic006G211800 Sobic001G010700 Sobic001G010700 Sobic002G423800--Sobic001G010700 Sobic002G423800--Sobic001G444300 Sobic002G423800--Sobic002G428200 Sobic002G423800--Sobic001G542900 Sobic006G252200 Sobic006G252200 Sobic002G423800--Sobic006G252200 Sobic008G145100 Sobic008G145100 Sobic002G423800--Sobic008G145100 Sobic002G423800--Sobic007G176200 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic006G211800--Sobic005G105500 Sobic006G211800--Sobic009G234400 Sobic006G211800--Sobic001G444300 Sobic006G211800--Sobic001G404100 Sobic006G211800--Sobic009G212300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.