Gene annotation
Transcriptome id Sobic.001G404200.1
Synonym Sb01g038240, MEE67
Functional annotation mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
UniProt C5WNG9
Pfam PF02466
Panther DB PTHR14110
NCBI CDD KOG3225; Mitochondrial import inner membrane translocase, subunit TIM22
KEGG Orthology K17790; mitochondrial import inner membrane translocase subunit TIM22
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G10110 : Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
RAP-DB (Rice) LOC_Os03g18500.2 : mitochondrial import inner membrane translocase subunit Tim17, putative, expressed
MaizeGDB (Corn) Zm00025a002027
Brachypodium KQK22104
Barley HORVU5Hr1G109630.1 , HORVU5Hr1G109630.2 , HORVU5Hr1G109630.3 , HORVU5Hr1G109630.4 , HORVU5Hr1G109630.5 , HORVU5Hr1G109630.6
Wheat TraesCS4A02G113200 , TraesCS4D02G192200 , TraesCS4B02G191000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G404200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
2 Sobic.001G332300 expressed protein -
3 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
4 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
5 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
6 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
7 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
8 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
9 Sobic.008G145100 glycosyl transferase, group 1 domain containing protein, expressed K03844: alpha-1,2-mannosyltransferase
10 Sobic.003G214300 expressed protein -
11 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
12 Sobic.009G222900 ribosomal protein, putative, expressed K02948: RP-S11, MRPS11, small subunit ribosomal protein S11
13 Sobic.002G268400 expressed protein -
14 Sobic.003G118400 expressed protein -
15 Sobic.001G285300 expressed protein -
16 Sobic.001G358500 GA20734-PA, putative, expressed -
17 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
18 Sobic.006G083100 formyl transferase, putative, expressed K00601: phosphoribosylglycinamide formyltransferase
19 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
20 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1


Gene co-expression network
sample Sobic001G404200 Sobic001G404200 Sobic006G094600 Sobic006G094600 Sobic001G404200--Sobic006G094600 Sobic001G332300 Sobic001G332300 Sobic001G404200--Sobic001G332300 Sobic007G118000 Sobic007G118000 Sobic001G404200--Sobic007G118000 Sobic003G374000 Sobic003G374000 Sobic001G404200--Sobic003G374000 Sobic005G184200 Sobic005G184200 Sobic001G404200--Sobic005G184200 Sobic008G110500 Sobic008G110500 Sobic001G404200--Sobic008G110500 Sobic007G014900 Sobic007G014900 Sobic001G404200--Sobic007G014900 Sobic003G148900 Sobic003G148900 Sobic001G404200--Sobic003G148900 Sobic008G145100 Sobic008G145100 Sobic001G404200--Sobic008G145100 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic001G332300--Sobic005G184200 Sobic001G378200 Sobic001G378200 Sobic001G332300--Sobic001G378200 Sobic004G025300 Sobic004G025300 Sobic001G332300--Sobic004G025300 Sobic001G112400 Sobic001G112400 Sobic001G332300--Sobic001G112400 Sobic001G332300--Sobic001G404200 Sobic001G358500 Sobic001G358500 Sobic001G332300--Sobic001G358500 Sobic006G083100 Sobic006G083100 Sobic001G332300--Sobic006G083100 Sobic001G332300--Sobic003G374000 Sobic002G136400 Sobic002G136400 Sobic001G332300--Sobic002G136400 Sobic007G045600 Sobic007G045600 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic002G281300 Sobic002G281300 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic003G374000--Sobic007G118000 Sobic009G192000 Sobic009G192000 Sobic003G374000--Sobic009G192000 Sobic003G374000--Sobic010G205300 Sobic002G268400 Sobic002G268400 Sobic003G374000--Sobic002G268400 Sobic001G341500 Sobic001G341500 Sobic003G374000--Sobic001G341500 Sobic007G167900 Sobic007G167900 Sobic003G374000--Sobic007G167900 Sobic003G338500 Sobic003G338500 Sobic003G374000--Sobic003G338500 Sobic001G428800 Sobic001G428800 Sobic003G374000--Sobic001G428800 Sobic003G374000--Sobic008G137600 Sobic005G184200--Sobic001G112400 Sobic003G116600 Sobic003G116600 Sobic005G184200--Sobic003G116600 Sobic001G443200 Sobic001G443200 Sobic005G184200--Sobic001G443200 Sobic003G217100 Sobic003G217100 Sobic005G184200--Sobic003G217100 Sobic005G184200--Sobic001G332300 Sobic004G344800 Sobic004G344800 Sobic005G184200--Sobic004G344800 Sobic002G090700 Sobic002G090700 Sobic005G184200--Sobic002G090700 Sobic005G184200--Sobic001G378200 Sobic005G184200--Sobic008G110500 Sobic008G110500--Sobic001G443200 Sobic008G110500--Sobic003G148900 Sobic008G102600 Sobic008G102600 Sobic008G110500--Sobic008G102600 Sobic001G387800 Sobic001G387800 Sobic008G110500--Sobic001G387800 Sobic008G110500--Sobic008G145100 Sobic010G040900 Sobic010G040900 Sobic008G110500--Sobic010G040900 Sobic008G110500--Sobic005G184200 Sobic001G542900 Sobic001G542900 Sobic008G110500--Sobic001G542900 Sobic003G196200 Sobic003G196200 Sobic008G110500--Sobic003G196200 Sobic001G085100 Sobic001G085100 Sobic007G014900--Sobic001G085100 Sobic004G356900 Sobic004G356900 Sobic007G014900--Sobic004G356900 Sobic007G014900--Sobic010G205300 Sobic006G225300 Sobic006G225300 Sobic007G014900--Sobic006G225300 Sobic007G014900--Sobic007G167900 Sobic007G014900--Sobic006G183000 Sobic003G312200 Sobic003G312200 Sobic007G014900--Sobic003G312200 Sobic004G194900 Sobic004G194900 Sobic007G014900--Sobic004G194900 Sobic007G188300 Sobic007G188300 Sobic007G014900--Sobic007G188300 Sobic003G200600 Sobic003G200600 Sobic003G148900--Sobic003G200600 Sobic007G117800 Sobic007G117800 Sobic003G148900--Sobic007G117800 Sobic002G027800 Sobic002G027800 Sobic003G148900--Sobic002G027800 Sobic007G012900 Sobic007G012900 Sobic003G148900--Sobic007G012900 Sobic003G148900--Sobic008G110500 Sobic002G423800 Sobic002G423800 Sobic003G148900--Sobic002G423800 Sobic001G421400 Sobic001G421400 Sobic003G148900--Sobic001G421400 Sobic003G128300 Sobic003G128300 Sobic003G148900--Sobic003G128300 Sobic003G224300 Sobic003G224300 Sobic003G148900--Sobic003G224300 Sobic010G073100 Sobic010G073100 Sobic008G145100--Sobic010G073100 Sobic008G145100--Sobic002G423800 Sobic008G145100--Sobic008G110500 Sobic001G444300 Sobic001G444300 Sobic008G145100--Sobic001G444300 Sobic002G029300 Sobic002G029300 Sobic008G145100--Sobic002G029300 Sobic008G145100--Sobic001G033500 Sobic004G010900 Sobic004G010900 Sobic008G145100--Sobic004G010900 Sobic006G203100 Sobic006G203100 Sobic008G145100--Sobic006G203100 Sobic008G129600 Sobic008G129600 Sobic008G145100--Sobic008G129600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.