Gene annotation
Transcriptome id Sobic.009G033900.3,Sobic.009G033900.1,Sobic.009G033900.2
Synonym Sb09g002870
Functional annotation snurportin-1, putative, expressed
UniProt A0A1B6P6C2
Pfam -
Panther DB PTHR13403 PTHR13403:SF6
NCBI CDD KOG3132; m3G-cap-specific nuclear import receptor (Snurportin1)
KEGG Orthology K13151; SNUPN, snurportin-1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24880 : -
RAP-DB (Rice) LOC_Os01g01130.1 : snurportin-1, putative, expressed
MaizeGDB (Corn) Zm00025a038133
Brachypodium PNT69962 , PNT69963
Barley HORVU3Hr1G015060.1 , HORVU3Hr1G015060.3 , HORVU3Hr1G015060.2 , HORVU3Hr1G015060.5 , HORVU3Hr1G015060.4 , HORVU3Hr1G015060.7 , HORVU3Hr1G015060.6 , HORVU3Hr1G015060.9 , HORVU3Hr1G015060.8 , HORVU3Hr1G015060.15 , HORVU3Hr1G015060.14 , HORVU3Hr1G015060.17 , HORVU3Hr1G015060.16 , HORVU3Hr1G015060.11 , HORVU3Hr1G015060.10 , HORVU3Hr1G015060.13 , HORVU3Hr1G015060.12
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G033900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G183000 RING zinc finger protein, putative, expressed -
2 Sobic.002G268400 expressed protein -
3 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
4 Sobic.004G074300 phytoene dehydrogenase-like, putative, expressed K16750: biogenesis of lysosome-related organelles complex 1 subunit 2
5 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
6 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
7 Sobic.004G057800 URED, putative, expressed K03190: ureD, urease accessory protein
8 Sobic.010G269100 zinc finger family protein, putative, expressed -
9 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
10 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
11 Sobic.006G242300 - -
12 Sobic.001G136900 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
13 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
14 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
15 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
16 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
17 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
18 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
19 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
20 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1


Gene co-expression network
sample Sobic009G033900 Sobic009G033900 Sobic006G183000 Sobic006G183000 Sobic009G033900--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic004G074300 Sobic004G074300 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic009G033900--Sobic006G252100 Sobic002G129000 Sobic002G129000 Sobic006G183000--Sobic002G129000 Sobic001G294900 Sobic001G294900 Sobic006G183000--Sobic001G294900 Sobic006G183000--Sobic009G033900 Sobic006G109700 Sobic006G109700 Sobic006G183000--Sobic006G109700 Sobic006G183000--Sobic002G268400 Sobic001G136900 Sobic001G136900 Sobic006G183000--Sobic001G136900 Sobic009G050700 Sobic009G050700 Sobic006G183000--Sobic009G050700 Sobic003G405700 Sobic003G405700 Sobic006G183000--Sobic003G405700 Sobic006G094600 Sobic006G094600 Sobic006G183000--Sobic006G094600 Sobic010G057900 Sobic010G057900 Sobic002G268400--Sobic010G057900 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic001G249700--Sobic009G033900 Sobic010G247400 Sobic010G247400 Sobic001G249700--Sobic010G247400 Sobic009G164000 Sobic009G164000 Sobic001G249700--Sobic009G164000 Sobic004G156800 Sobic004G156800 Sobic001G249700--Sobic004G156800 Sobic002G256200 Sobic002G256200 Sobic001G249700--Sobic002G256200 Sobic001G259000 Sobic001G259000 Sobic001G249700--Sobic001G259000 Sobic006G270600 Sobic006G270600 Sobic001G249700--Sobic006G270600 Sobic001G168900 Sobic001G168900 Sobic001G249700--Sobic001G168900 Sobic001G249700--Sobic004G356900 Sobic004G074300--Sobic002G268400 Sobic003G119400 Sobic003G119400 Sobic004G074300--Sobic003G119400 Sobic004G074300--Sobic001G152000 Sobic004G074300--Sobic009G033900 Sobic004G074300--Sobic001G263000 Sobic002G259400 Sobic002G259400 Sobic004G074300--Sobic002G259400 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500 Sobic009G004600 Sobic009G004600 Sobic001G263000--Sobic009G004600 Sobic006G244700 Sobic006G244700 Sobic001G263000--Sobic006G244700 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic001G263000--Sobic004G074300 Sobic001G263000--Sobic004G356900 Sobic001G263000--Sobic010G057900 Sobic001G152000--Sobic002G268400 Sobic001G152000--Sobic004G074300 Sobic001G152000--Sobic009G033900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic001G152000--Sobic003G405700 Sobic001G152000--Sobic006G183000 Sobic001G390500 Sobic001G390500 Sobic004G057800--Sobic001G390500 Sobic004G057800--Sobic009G033900 Sobic004G057800--Sobic001G136900 Sobic001G309100 Sobic001G309100 Sobic004G057800--Sobic001G309100 Sobic001G038100 Sobic001G038100 Sobic004G057800--Sobic001G038100 Sobic003G311000 Sobic003G311000 Sobic004G057800--Sobic003G311000 Sobic007G205000 Sobic007G205000 Sobic004G057800--Sobic007G205000 Sobic001G370300 Sobic001G370300 Sobic004G057800--Sobic001G370300 Sobic004G057800--Sobic006G183000 Sobic003G099300 Sobic003G099300 Sobic010G269100--Sobic003G099300 Sobic010G269100--Sobic002G256200 Sobic008G092300 Sobic008G092300 Sobic010G269100--Sobic008G092300 Sobic006G056200 Sobic006G056200 Sobic010G269100--Sobic006G056200 Sobic010G239800 Sobic010G239800 Sobic010G269100--Sobic010G239800 Sobic010G269100--Sobic002G268400 Sobic006G278700 Sobic006G278700 Sobic010G269100--Sobic006G278700 Sobic010G085200 Sobic010G085200 Sobic010G269100--Sobic010G085200 Sobic010G269100--Sobic009G033900 Sobic006G252100--Sobic002G268400 Sobic006G252100--Sobic001G152000 Sobic006G252100--Sobic009G033900 Sobic006G216000 Sobic006G216000 Sobic006G252100--Sobic006G216000 Sobic003G220700 Sobic003G220700 Sobic006G252100--Sobic003G220700 Sobic006G252100--Sobic006G094600 Sobic001G226100 Sobic001G226100 Sobic006G252100--Sobic001G226100 Sobic006G252100--Sobic004G074300 Sobic006G252100--Sobic001G370300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.