Gene annotation
Transcriptome id Sobic.010G247400.1
Synonym Sb10g028620, IMP4
Functional annotation Brix domain containing protein, putative, expressed
UniProt C5Z8T9
Pfam PF04427
Panther DB PTHR22734 PTHR22734:SF2
NCBI CDD KOG2781; U3 small nucleolar ribonucleoprotein (snoRNP) component
KEGG Orthology K14561; U3 small nucleolar ribonucleoprotein protein IMP4
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G63780 : Ribosomal RNA processing Brix domain protein
RAP-DB (Rice) LOC_Os08g05880.1 : Brix domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018326
Brachypodium KQJ95349
Barley -
Wheat TraesCS7A02G301400
Populus -


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cDNA sequences
Sobic.010G247400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G249700 expressed protein K11877: PSMG3, proteasome assembly chaperone 3
2 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
3 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
4 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
5 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
6 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
7 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
8 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
9 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
10 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
11 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7
12 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
13 Sobic.010G251100 - K03257: translation initiation factor 4A
14 Sobic.003G214300 expressed protein -
15 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
16 Sobic.008G004400 GIL1, putative, expressed -
17 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
18 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
19 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
20 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4


Gene co-expression network
sample Sobic010G247400 Sobic010G247400 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic001G259000 Sobic001G259000 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic001G249700--Sobic009G033900 Sobic001G249700--Sobic010G247400 Sobic009G164000 Sobic009G164000 Sobic001G249700--Sobic009G164000 Sobic004G156800 Sobic004G156800 Sobic001G249700--Sobic004G156800 Sobic002G256200 Sobic002G256200 Sobic001G249700--Sobic002G256200 Sobic001G249700--Sobic001G259000 Sobic006G270600 Sobic006G270600 Sobic001G249700--Sobic006G270600 Sobic001G168900 Sobic001G168900 Sobic001G249700--Sobic001G168900 Sobic004G356900 Sobic004G356900 Sobic001G249700--Sobic004G356900 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic001G259000--Sobic004G156800 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G145400 Sobic001G145400 Sobic001G259000--Sobic001G145400 Sobic008G160000 Sobic008G160000 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic004G340400 Sobic004G340400 Sobic001G259000--Sobic004G340400 Sobic009G138700 Sobic009G138700 Sobic001G259000--Sobic009G138700 Sobic001G527300--Sobic004G156800 Sobic008G147200 Sobic008G147200 Sobic001G527300--Sobic008G147200 Sobic001G527300--Sobic009G143800 Sobic001G291800 Sobic001G291800 Sobic001G527300--Sobic001G291800 Sobic001G527300--Sobic010G247400 Sobic010G007100 Sobic010G007100 Sobic001G527300--Sobic010G007100 Sobic006G226300 Sobic006G226300 Sobic001G527300--Sobic006G226300 Sobic001G527300--Sobic001G168900 Sobic001G527300--Sobic004G340400 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic001G404100 Sobic001G404100 Sobic002G341800--Sobic001G404100 Sobic001G481700 Sobic001G481700 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic005G105500 Sobic005G105500 Sobic002G341800--Sobic005G105500 Sobic008G137600 Sobic008G137600 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic004G307500 Sobic004G307500 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic009G258400 Sobic009G258400 Sobic002G077900--Sobic009G258400 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic006G010000 Sobic006G010000 Sobic006G233300--Sobic006G010000 Sobic002G143900 Sobic002G143900 Sobic006G233300--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic002G394800 Sobic002G394800 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic010G239800 Sobic010G239800 Sobic006G233300--Sobic010G239800 Sobic006G233300--Sobic010G247400 Sobic002G280600 Sobic002G280600 Sobic006G233300--Sobic002G280600 Sobic006G183000 Sobic006G183000 Sobic009G033900--Sobic006G183000 Sobic002G268400 Sobic002G268400 Sobic009G033900--Sobic002G268400 Sobic009G033900--Sobic001G249700 Sobic004G074300 Sobic004G074300 Sobic009G033900--Sobic004G074300 Sobic001G263000 Sobic001G263000 Sobic009G033900--Sobic001G263000 Sobic001G152000 Sobic001G152000 Sobic009G033900--Sobic001G152000 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic009G033900--Sobic006G252100
Octagon: transcription factors


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