Gene annotation
Transcriptome id Sobic.002G077900.2,Sobic.002G077900.1
Synonym ATINT6, INT6, EIF3E, TIF3E1, Sb02g006500, ATEIF3E-1, INT-6
Functional annotation eukaryotic translation initiation factor 3 subunit E, putative, expressed
UniProt A0A1B6Q9V6 , A0A1B6Q9U4
Pfam PF01399 PF09440
Panther DB PTHR10317
NCBI CDD -
KEGG Orthology K03250; EIF3E, translation initiation factor 3 subunit E
Gene Ontology GO:0005515; protein binding GO:0005852eukaryotic translation initiation factor 3 complex GO:0005737cytoplasm GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT3G57290 : eukaryotic translation initiation factor 3E
RAP-DB (Rice) LOC_Os07g12110.1 : eukaryotic translation initiation factor 3 subunit E, putative, expressed
MaizeGDB (Corn) Zm00025a054948 , Zm00025a058198 , Zm00025a038002 , Zm00025a055878 , Zm00025a013406 , Zm00025a032446 , Zm00025a058053 , Zm00025a034551 , Zm00025a018566 , Zm00025a002863 , Zm00025a046536 , Zm00025a051264 , Zm00025a043662 , Zm00025a052148 , Zm00025a054137 , Zm00025a045408 , Zm00025a041664 , Zm00025a035279 , Zm00025a054166 , Zm00025a047114
Brachypodium KQK20343
Barley HORVU5Hr1G072560.1 , HORVU5Hr1G072560.2
Wheat TraesCS5B02G260000 , TraesCS5B02G260000
Populus -


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cDNA sequences
Sobic.002G077900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
2 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
3 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
4 Sobic.003G420700 expressed protein -
5 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
6 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
7 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
8 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
9 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.006G278700 expressed protein -
11 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
12 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
13 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
14 Sobic.003G354100 expressed protein -
15 Sobic.007G205000 zinc finger family protein, putative, expressed -
16 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
17 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
18 Sobic.006G049100 expressed protein -
19 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
20 Sobic.001G285300 expressed protein -


Gene co-expression network
sample Sobic002G077900 Sobic002G077900 Sobic001G168900 Sobic001G168900 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic001G370300 Sobic001G370300 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic004G307500 Sobic004G307500 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic009G258400 Sobic009G258400 Sobic002G077900--Sobic009G258400 Sobic006G044600 Sobic006G044600 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic001G168900--Sobic001G291800 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic003G132000 Sobic003G132000 Sobic001G168900--Sobic003G132000 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G010600 Sobic001G010600 Sobic001G226000--Sobic001G010600 Sobic004G013600 Sobic004G013600 Sobic001G226000--Sobic004G013600 Sobic001G370300--Sobic002G077900 Sobic002G177500 Sobic002G177500 Sobic001G370300--Sobic002G177500 Sobic006G245700 Sobic006G245700 Sobic001G370300--Sobic006G245700 Sobic010G247400 Sobic010G247400 Sobic001G370300--Sobic010G247400 Sobic001G285300 Sobic001G285300 Sobic001G370300--Sobic001G285300 Sobic003G439800 Sobic003G439800 Sobic001G370300--Sobic003G439800 Sobic001G023800 Sobic001G023800 Sobic001G370300--Sobic001G023800 Sobic006G252100 Sobic006G252100 Sobic001G370300--Sobic006G252100 Sobic004G057800 Sobic004G057800 Sobic001G370300--Sobic004G057800 Sobic003G420700--Sobic010G193800 Sobic001G038100 Sobic001G038100 Sobic003G420700--Sobic001G038100 Sobic003G420700--Sobic002G077900 Sobic001G309100 Sobic001G309100 Sobic003G420700--Sobic001G309100 Sobic003G420700--Sobic001G285300 Sobic007G117100 Sobic007G117100 Sobic003G420700--Sobic007G117100 Sobic002G014700 Sobic002G014700 Sobic003G420700--Sobic002G014700 Sobic009G036900 Sobic009G036900 Sobic003G420700--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic003G420700--Sobic003G024800 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic004G307500--Sobic009G258400 Sobic004G307500--Sobic001G291800 Sobic007G143500 Sobic007G143500 Sobic004G307500--Sobic007G143500 Sobic001G007800 Sobic001G007800 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic001G360200 Sobic001G360200 Sobic009G058500--Sobic001G360200 Sobic007G184500 Sobic007G184500 Sobic009G058500--Sobic007G184500 Sobic010G018700 Sobic010G018700 Sobic009G058500--Sobic010G018700 Sobic009G058500--Sobic002G077900 Sobic009G058500--Sobic003G439800 Sobic003G074400 Sobic003G074400 Sobic009G058500--Sobic003G074400 Sobic009G058500--Sobic006G278700 Sobic009G058500--Sobic006G044600 Sobic009G058500--Sobic004G346100 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic009G258400--Sobic002G077900 Sobic009G258400--Sobic001G291800 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic002G341800 Sobic002G341800 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic006G044600--Sobic002G394600 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic001G458700 Sobic001G458700 Sobic006G044600--Sobic001G458700 Sobic006G044600--Sobic002G077900 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950
Octagon: transcription factors


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