Gene annotation
Transcriptome id Sobic.009G258400.1
Synonym RPN13, Sb09g030790
Functional annotation adhesion regulating molecule family, putative, expressed
UniProt C5YX27 , A0A097PT27
Pfam PF16550 PF04683
Panther DB PTHR12225
NCBI CDD KOG3037; Cell membrane glycoprotein
KEGG Orthology -
Gene Ontology GO:0005737; cytoplasm GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G26590 : regulatory particle non-ATPase 13
RAP-DB (Rice) LOC_Os05g51640.1 : adhesion regulating molecule family, putative, expressed
MaizeGDB (Corn) Zm00025a044735
Brachypodium -
Barley HORVU1Hr1G064630.8 , HORVU1Hr1G064630.9 , HORVU1Hr1G064630.2 , HORVU1Hr1G064630.1 , HORVU1Hr1G064630.6 , HORVU1Hr1G064630.7 , HORVU1Hr1G064630.4 , HORVU1Hr1G064630.5
Wheat TraesCS1D02G260000 , TraesCS1A02G260100 , TraesCS1B02G270600 , TraesCS1B02G270600
Populus -


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cDNA sequences
Sobic.009G258400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
2 Sobic.006G120800 transglutaminase, putative, expressed -
3 Sobic.004G091200 histone deacetylase 19, putative, expressed K06067: histone deacetylase 1/2
4 Sobic.001G114500 ATP binding protein, putative, expressed K06883: uncharacterized protein
5 Sobic.009G036200 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, putative, expressed K11648: SMARCB1, SNF5, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
6 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
7 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
8 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
9 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
10 Sobic.007G111100 PSF3 - Putative GINS complex subunit, expressed K10734: GINS complex subunit 3
11 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
12 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
13 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
14 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
15 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
16 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
17 Sobic.004G192900 expressed protein -
18 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
19 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.006G270600 PSF1 - Putative GINS complex subunit, expressed K10732: GINS1, GINS complex subunit 1


Gene co-expression network
sample Sobic009G258400 Sobic009G258400 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic006G120800 Sobic006G120800 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic003G132000 Sobic003G132000 Sobic009G258400--Sobic003G132000 Sobic001G507400 Sobic001G507400 Sobic009G258400--Sobic001G507400 Sobic007G187600 Sobic007G187600 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic001G168900--Sobic002G077900 Sobic001G168900--Sobic001G291800 Sobic001G168900--Sobic009G258400 Sobic001G042200 Sobic001G042200 Sobic001G168900--Sobic001G042200 Sobic006G049100 Sobic006G049100 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic001G168900--Sobic003G132000 Sobic001G038100 Sobic001G038100 Sobic006G120800--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic006G120800--Sobic007G117100 Sobic006G120800--Sobic009G258400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G261100 Sobic006G261100 Sobic006G120800--Sobic006G261100 Sobic010G154000 Sobic010G154000 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic004G091200--Sobic009G258400 Sobic001G005600 Sobic001G005600 Sobic004G091200--Sobic001G005600 Sobic003G005200 Sobic003G005200 Sobic004G091200--Sobic003G005200 Sobic010G129600 Sobic010G129600 Sobic004G091200--Sobic010G129600 Sobic001G473600 Sobic001G473600 Sobic004G091200--Sobic001G473600 Sobic004G091200--Sobic001G114500 Sobic002G105200 Sobic002G105200 Sobic004G091200--Sobic002G105200 Sobic003G201900 Sobic003G201900 Sobic004G091200--Sobic003G201900 Sobic003G038600 Sobic003G038600 Sobic004G091200--Sobic003G038600 Sobic001G114500--Sobic003G132000 Sobic003G121300 Sobic003G121300 Sobic001G114500--Sobic003G121300 Sobic008G103300 Sobic008G103300 Sobic001G114500--Sobic008G103300 Sobic009G164000 Sobic009G164000 Sobic001G114500--Sobic009G164000 Sobic001G114500--Sobic001G473600 Sobic007G084100 Sobic007G084100 Sobic001G114500--Sobic007G084100 Sobic005G160400 Sobic005G160400 Sobic001G114500--Sobic005G160400 Sobic001G114500--Sobic009G258400 Sobic004G156800 Sobic004G156800 Sobic001G114500--Sobic004G156800 Sobic007G111100 Sobic007G111100 Sobic009G036200--Sobic007G111100 Sobic001G395100 Sobic001G395100 Sobic009G036200--Sobic001G395100 Sobic009G036200--Sobic009G258400 Sobic003G212900 Sobic003G212900 Sobic009G036200--Sobic003G212900 Sobic002G262700 Sobic002G262700 Sobic009G036200--Sobic002G262700 Sobic006G121300 Sobic006G121300 Sobic009G036200--Sobic006G121300 Sobic009G036200--Sobic004G346100 Sobic009G036200--Sobic001G042200 Sobic004G309900 Sobic004G309900 Sobic009G036200--Sobic004G309900 Sobic002G077900--Sobic001G168900 Sobic001G226000 Sobic001G226000 Sobic002G077900--Sobic001G226000 Sobic001G370300 Sobic001G370300 Sobic002G077900--Sobic001G370300 Sobic003G420700 Sobic003G420700 Sobic002G077900--Sobic003G420700 Sobic002G077900--Sobic004G307500 Sobic009G058500 Sobic009G058500 Sobic002G077900--Sobic009G058500 Sobic002G077900--Sobic009G258400 Sobic006G044600 Sobic006G044600 Sobic002G077900--Sobic006G044600 Sobic010G193800 Sobic010G193800 Sobic002G077900--Sobic010G193800 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G291800--Sobic001G168900 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G046300 Sobic003G046300 Sobic003G132000--Sobic003G046300 Sobic003G132000--Sobic008G103300 Sobic001G487100 Sobic001G487100 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic001G507400--Sobic001G038100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic001G507400--Sobic006G120800 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic001G507400--Sobic010G154000
Octagon: transcription factors


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