Gene annotation
Transcriptome id Sobic.004G074300.1
Synonym Sb04g006140
Functional annotation phytoene dehydrogenase-like, putative, expressed
UniProt C5XX31
Pfam PF10046
Panther DB -
NCBI CDD KOG4559; Uncharacterized conserved protein
KEGG Orthology K16750; biogenesis of lysosome-related organelles complex 1 subunit 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G49550 : -
RAP-DB (Rice) LOC_Os02g09780.1 : phytoene dehydrogenase-like, putative, expressed
MaizeGDB (Corn) Zm00025a019392
Brachypodium -
Barley -
Wheat TraesCS6D02G160500 , TraesCS6A02G170800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G074300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G268400 expressed protein -
2 Sobic.003G119400 PUR ALPHA-1, putative, expressed -
3 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
4 Sobic.009G033900 snurportin-1, putative, expressed K13151: SNUPN, snurportin-1
5 Sobic.001G263000 membrane associated DUF588 domain containing protein, putative, expressed -
6 Sobic.002G259400 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
7 Sobic.010G057900 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
8 Sobic.004G077600 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
9 Sobic.006G054500 membrane-anchored ubiquitin-fold protein, putative, expressed -
10 Sobic.006G252100 mediator of RNA polymerase II transcription subunit 7, putative, expressed K15148: mediator of RNA polymerase II transcription subunit 7
11 Sobic.002G113900 lipid binding protein, putative, expressed -
12 Sobic.003G127300 expressed protein -
13 Sobic.002G306400 zinc finger family protein, putative, expressed -
14 Sobic.010G146600 cyclin-dependent kinase F-1, putative, expressed -
15 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit
16 Sobic.006G272200 cleavage and polyadenylation specificity factor subunit 5, putative, expressed K14397: NUDT21, CPSF5, cleavage and polyadenylation specificity factor subunit 5
17 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
18 Sobic.006G270900 acyl-CoA-binding domain-containing protein 6, putative, expressed -
19 Sobic.009G004600 transcription initiation factor IIA gamma chain, putative, expressed K03123: TFIIA2, GTF2A2, transcription initiation factor TFIIA small subunit
20 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6


Gene co-expression network
sample Sobic004G074300 Sobic004G074300 Sobic002G268400 Sobic002G268400 Sobic004G074300--Sobic002G268400 Sobic003G119400 Sobic003G119400 Sobic004G074300--Sobic003G119400 Sobic001G152000 Sobic001G152000 Sobic004G074300--Sobic001G152000 Sobic009G033900 Sobic009G033900 Sobic004G074300--Sobic009G033900 Sobic001G263000 Sobic001G263000 Sobic004G074300--Sobic001G263000 Sobic002G259400 Sobic002G259400 Sobic004G074300--Sobic002G259400 Sobic010G057900 Sobic010G057900 Sobic004G074300--Sobic010G057900 Sobic004G077600 Sobic004G077600 Sobic004G074300--Sobic004G077600 Sobic006G054500 Sobic006G054500 Sobic004G074300--Sobic006G054500 Sobic002G268400--Sobic010G057900 Sobic002G268400--Sobic001G152000 Sobic002G268400--Sobic004G074300 Sobic006G252100 Sobic006G252100 Sobic002G268400--Sobic006G252100 Sobic002G268400--Sobic009G033900 Sobic006G270900 Sobic006G270900 Sobic002G268400--Sobic006G270900 Sobic006G183000 Sobic006G183000 Sobic002G268400--Sobic006G183000 Sobic004G356900 Sobic004G356900 Sobic002G268400--Sobic004G356900 Sobic003G439800 Sobic003G439800 Sobic002G268400--Sobic003G439800 Sobic003G119400--Sobic004G074300 Sobic001G041200 Sobic001G041200 Sobic003G119400--Sobic001G041200 Sobic003G119400--Sobic002G259400 Sobic010G146600 Sobic010G146600 Sobic003G119400--Sobic010G146600 Sobic006G216000 Sobic006G216000 Sobic003G119400--Sobic006G216000 Sobic006G272200 Sobic006G272200 Sobic003G119400--Sobic006G272200 Sobic006G242300 Sobic006G242300 Sobic003G119400--Sobic006G242300 Sobic003G119400--Sobic002G268400 Sobic002G306400 Sobic002G306400 Sobic003G119400--Sobic002G306400 Sobic001G152000--Sobic002G268400 Sobic001G152000--Sobic004G074300 Sobic001G152000--Sobic009G033900 Sobic001G294900 Sobic001G294900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic003G405700 Sobic003G405700 Sobic001G152000--Sobic003G405700 Sobic001G152000--Sobic006G183000 Sobic009G033900--Sobic006G183000 Sobic009G033900--Sobic002G268400 Sobic001G249700 Sobic001G249700 Sobic009G033900--Sobic001G249700 Sobic009G033900--Sobic004G074300 Sobic009G033900--Sobic001G263000 Sobic009G033900--Sobic001G152000 Sobic004G057800 Sobic004G057800 Sobic009G033900--Sobic004G057800 Sobic010G269100 Sobic010G269100 Sobic009G033900--Sobic010G269100 Sobic009G033900--Sobic006G252100 Sobic009G004600 Sobic009G004600 Sobic001G263000--Sobic009G004600 Sobic006G244700 Sobic006G244700 Sobic001G263000--Sobic006G244700 Sobic001G263000--Sobic009G033900 Sobic002G209400 Sobic002G209400 Sobic001G263000--Sobic002G209400 Sobic001G263000--Sobic002G268400 Sobic002G039000 Sobic002G039000 Sobic001G263000--Sobic002G039000 Sobic001G263000--Sobic004G074300 Sobic001G263000--Sobic004G356900 Sobic001G263000--Sobic010G057900 Sobic002G259400--Sobic003G119400 Sobic002G259400--Sobic004G074300 Sobic002G259400--Sobic001G041200 Sobic002G259400--Sobic002G268400 Sobic002G259400--Sobic009G033900 Sobic002G259400--Sobic010G269100 Sobic006G281500 Sobic006G281500 Sobic002G259400--Sobic006G281500 Sobic002G259400--Sobic001G263000 Sobic010G085200 Sobic010G085200 Sobic002G259400--Sobic010G085200 Sobic010G057900--Sobic002G268400 Sobic006G101700 Sobic006G101700 Sobic010G057900--Sobic006G101700 Sobic002G143000 Sobic002G143000 Sobic010G057900--Sobic002G143000 Sobic001G078800 Sobic001G078800 Sobic010G057900--Sobic001G078800 Sobic003G314100 Sobic003G314100 Sobic010G057900--Sobic003G314100 Sobic009G192000 Sobic009G192000 Sobic010G057900--Sobic009G192000 Sobic010G205300 Sobic010G205300 Sobic010G057900--Sobic010G205300 Sobic001G458700 Sobic001G458700 Sobic010G057900--Sobic001G458700 Sobic010G057900--Sobic004G356900 Sobic004G077600--Sobic004G074300 Sobic005G160400 Sobic005G160400 Sobic004G077600--Sobic005G160400 Sobic002G113900 Sobic002G113900 Sobic004G077600--Sobic002G113900 Sobic004G077600--Sobic002G268400 Sobic003G122500 Sobic003G122500 Sobic004G077600--Sobic003G122500 Sobic002G347000 Sobic002G347000 Sobic004G077600--Sobic002G347000 Sobic004G077600--Sobic009G004600 Sobic001G459100 Sobic001G459100 Sobic004G077600--Sobic001G459100 Sobic004G086700 Sobic004G086700 Sobic004G077600--Sobic004G086700 Sobic007G079700 Sobic007G079700 Sobic006G054500--Sobic007G079700 Sobic006G054500--Sobic009G004600 Sobic004G060600 Sobic004G060600 Sobic006G054500--Sobic004G060600 Sobic004G301900 Sobic004G301900 Sobic006G054500--Sobic004G301900 Sobic006G054500--Sobic002G113900 Sobic006G054500--Sobic004G074300 Sobic001G364600 Sobic001G364600 Sobic006G054500--Sobic001G364600 Sobic002G273900 Sobic002G273900 Sobic006G054500--Sobic002G273900 Sobic010G090900 Sobic010G090900 Sobic006G054500--Sobic010G090900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.