Gene annotation
Transcriptome id Sobic.003G043400.1
Synonym Sb03g003820, ATSYP32, SYP32
Functional annotation syntaxin, putative, expressed
UniProt C5XMQ4
Pfam PF00804 PF11416 PF05739
Panther DB PTHR19957 PTHR19957:SF116
NCBI CDD KOG0812; SNARE protein SED5/Syntaxin 5
KEGG Orthology K08490; syntaxin 5
Gene Ontology GO:0016020; membrane GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G24350 : syntaxin of plants 32
RAP-DB (Rice) LOC_Os01g08400.1 : syntaxin, putative, expressed
MaizeGDB (Corn) Zm00025a035761 , Zm00025a023183
Brachypodium KQK03009
Barley HORVU3Hr1G022030.1 , HORVU3Hr1G022030.2
Wheat TraesCS3B02G138100 , TraesCS3A02G119100 , TraesCS3D02G121000 , TraesCS3D02G121000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G043400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -
2 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
3 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
4 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
5 Sobic.002G261900 arabinogalactan protein, putative, expressed -
6 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
7 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
8 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
9 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
10 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
11 Sobic.001G285300 expressed protein -
12 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
13 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
14 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
15 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
16 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
17 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
18 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
19 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
20 Sobic.001G444300 expressed protein -


Gene co-expression network
sample Sobic003G043400 Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic002G423800--Sobic003G043400 Sobic006G211800 Sobic006G211800 Sobic002G423800--Sobic006G211800 Sobic002G423800--Sobic001G010700 Sobic001G444300 Sobic001G444300 Sobic002G423800--Sobic001G444300 Sobic002G423800--Sobic002G428200 Sobic001G542900 Sobic001G542900 Sobic002G423800--Sobic001G542900 Sobic006G252200 Sobic006G252200 Sobic002G423800--Sobic006G252200 Sobic008G145100 Sobic008G145100 Sobic002G423800--Sobic008G145100 Sobic007G176200 Sobic007G176200 Sobic002G423800--Sobic007G176200 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G458700 Sobic001G458700 Sobic001G010700--Sobic001G458700 Sobic003G330500 Sobic003G330500 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic004G224900 Sobic004G224900 Sobic001G010700--Sobic004G224900 Sobic001G010700--Sobic003G043400 Sobic001G010700--Sobic002G423800 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic008G137600--Sobic001G502200 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic007G059900 Sobic007G059900 Sobic002G261900--Sobic007G059900 Sobic002G083266 Sobic002G083266 Sobic002G261900--Sobic002G083266 Sobic001G311100 Sobic001G311100 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic002G261900--Sobic003G043400 Sobic010G204300 Sobic010G204300 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G532100--Sobic001G294900 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic001G532100--Sobic003G043400 Sobic001G532100--Sobic003G273400 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic010G238700 Sobic010G238700 Sobic006G222400--Sobic010G238700 Sobic001G126200 Sobic001G126200 Sobic006G222400--Sobic001G126200 Sobic003G217100 Sobic003G217100 Sobic006G222400--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic006G222400--Sobic008G132800 Sobic006G222400--Sobic008G137600 Sobic006G222400--Sobic002G428200 Sobic001G105100 Sobic001G105100 Sobic006G222400--Sobic001G105100 Sobic004G224800 Sobic004G224800 Sobic006G222400--Sobic004G224800 Sobic010G017000 Sobic010G017000 Sobic006G222400--Sobic010G017000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.