Gene annotation
Transcriptome id Sobic.002G261900.2,Sobic.002G261900.3,Sobic.002G261900.1
Synonym Sb02g029670
Functional annotation arabinogalactan protein, putative, expressed
UniProt A0A1B6QDJ6 , A0A1B6QDK3 , A0A1B6QDK1
Pfam PF10349
Panther DB PTHR31606
NCBI CDD KOG3294; WW domain binding protein WBP-2, contains GRAM domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11680 : -
RAP-DB (Rice) LOC_Os09g33800.2,LOC_Os09g33800.1 : arabinogalactan protein, putative, expressed
MaizeGDB (Corn) Zm00025a056815 , Zm00025a056882 , Zm00025a014329 , Zm00025a052024 , Zm00025a047624 , Zm00025a008000 , Zm00025a008407
Brachypodium KQJ90981
Barley HORVU5Hr1G078020.1 , HORVU5Hr1G078000.1 , HORVU5Hr1G078000.2 , HORVU5Hr1G078000.3 , HORVU5Hr1G078000.4 , HORVU5Hr1G078000.5 , HORVU5Hr1G078000.6 , HORVU5Hr1G078000.7 , HORVU5Hr1G078000.8 , HORVU5Hr1G078000.9
Wheat TraesCS5B02G295600 , TraesCS5D02G303600 , TraesCS5A02G296400
Populus -


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cDNA sequences
Sobic.002G261900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
2 Sobic.007G059900 DUF292 domain containing protein, expressed -
3 Sobic.002G083266 - K00326: cytochrome-b5 reductase
4 Sobic.001G311100 ubiquitin family protein, putative, expressed K04523: UBQLN, ubiquilin
5 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
6 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
7 Sobic.010G204300 expressed protein -
8 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
9 Sobic.004G026200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
11 Sobic.010G026700 cornichon protein, putative, expressed -
12 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
13 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
14 Sobic.010G213400 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
15 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
16 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
17 Sobic.003G104700 Rer1 protein, putative, expressed -
18 Sobic.010G225300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
19 Sobic.010G163600 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
20 Sobic.008G161000 protein kinase domain containing protein, expressed -


Gene co-expression network
sample Sobic002G261900 Sobic002G261900 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic007G059900 Sobic007G059900 Sobic002G261900--Sobic007G059900 Sobic002G083266 Sobic002G083266 Sobic002G261900--Sobic002G083266 Sobic001G311100 Sobic001G311100 Sobic002G261900--Sobic001G311100 Sobic001G066700 Sobic001G066700 Sobic002G261900--Sobic001G066700 Sobic003G043400 Sobic003G043400 Sobic002G261900--Sobic003G043400 Sobic010G204300 Sobic010G204300 Sobic002G261900--Sobic010G204300 Sobic009G070200 Sobic009G070200 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic010G213400 Sobic010G213400 Sobic006G062800--Sobic010G213400 Sobic003G249800 Sobic003G249800 Sobic006G062800--Sobic003G249800 Sobic003G285800 Sobic003G285800 Sobic006G062800--Sobic003G285800 Sobic006G062800--Sobic007G059900 Sobic009G129000 Sobic009G129000 Sobic006G062800--Sobic009G129000 Sobic002G218000 Sobic002G218000 Sobic006G062800--Sobic002G218000 Sobic002G202300 Sobic002G202300 Sobic006G062800--Sobic002G202300 Sobic009G033700 Sobic009G033700 Sobic006G062800--Sobic009G033700 Sobic006G062800--Sobic002G261900 Sobic003G220600 Sobic003G220600 Sobic007G059900--Sobic003G220600 Sobic007G059900--Sobic006G062800 Sobic007G059900--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic007G059900--Sobic007G186300 Sobic007G059900--Sobic002G261900 Sobic008G161000 Sobic008G161000 Sobic007G059900--Sobic008G161000 Sobic004G293700 Sobic004G293700 Sobic007G059900--Sobic004G293700 Sobic002G296300 Sobic002G296300 Sobic007G059900--Sobic002G296300 Sobic009G152200 Sobic009G152200 Sobic007G059900--Sobic009G152200 Sobic003G367451 Sobic003G367451 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic009G111600 Sobic009G111600 Sobic002G083266--Sobic009G111600 Sobic001G224400 Sobic001G224400 Sobic002G083266--Sobic001G224400 Sobic002G083266--Sobic006G062800 Sobic002G083266--Sobic002G261900 Sobic002G083266--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic002G083266--Sobic004G272800 Sobic001G311100--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic001G311100--Sobic010G094600 Sobic009G160200 Sobic009G160200 Sobic001G311100--Sobic009G160200 Sobic001G311100--Sobic003G043400 Sobic010G026700 Sobic010G026700 Sobic001G311100--Sobic010G026700 Sobic001G283500 Sobic001G283500 Sobic001G311100--Sobic001G283500 Sobic010G188100 Sobic010G188100 Sobic001G311100--Sobic010G188100 Sobic010G017000 Sobic010G017000 Sobic001G311100--Sobic010G017000 Sobic001G311100--Sobic002G083266 Sobic003G358300 Sobic003G358300 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic001G066700--Sobic002G218000 Sobic005G111100 Sobic005G111100 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic001G066700--Sobic009G070200 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic010G204300--Sobic008G161000 Sobic003G115800 Sobic003G115800 Sobic010G204300--Sobic003G115800 Sobic010G204300--Sobic007G059900 Sobic001G147200 Sobic001G147200 Sobic010G204300--Sobic001G147200 Sobic010G204300--Sobic002G296300 Sobic010G204300--Sobic002G202300 Sobic003G181500 Sobic003G181500 Sobic010G204300--Sobic003G181500 Sobic010G204300--Sobic006G062800 Sobic010G246000 Sobic010G246000 Sobic010G204300--Sobic010G246000 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic002G044000 Sobic002G044000 Sobic009G070200--Sobic002G044000 Sobic008G134900 Sobic008G134900 Sobic009G070200--Sobic008G134900 Sobic009G070200--Sobic002G261900 Sobic009G070200--Sobic003G358300 Sobic009G120100 Sobic009G120100 Sobic009G070200--Sobic009G120100 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400 Sobic004G026200--Sobic010G213400 Sobic004G026200--Sobic006G062800 Sobic004G026200--Sobic002G261900 Sobic002G196350 Sobic002G196350 Sobic004G026200--Sobic002G196350 Sobic004G284500 Sobic004G284500 Sobic004G026200--Sobic004G284500 Sobic001G441000 Sobic001G441000 Sobic004G026200--Sobic001G441000 Sobic006G131400 Sobic006G131400 Sobic004G026200--Sobic006G131400 Sobic004G026200--Sobic001G283500 Sobic001G095300 Sobic001G095300 Sobic004G026200--Sobic001G095300
Octagon: transcription factors


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