Gene annotation
Transcriptome id Sobic.006G049700.1
Synonym Sb06g013230
Functional annotation SAM domain family protein, expressed
UniProt C5YEP7
Pfam PF00536
Panther DB PTHR23509 PTHR23509:SF1
NCBI CDD KOG4374; RNA-binding protein Bicaudal-C
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07170 : Sterile alpha motif (SAM) domain-containing protein
RAP-DB (Rice) LOC_Os04g30910.2 : SAM domain family protein, expressed
MaizeGDB (Corn) Zm00025a055838 , Zm00025a011827
Brachypodium KQJ82206
Barley HORVU2Hr1G068530.6 , HORVU2Hr1G068530.7 , HORVU2Hr1G068530.4 , HORVU2Hr1G068530.5 , HORVU2Hr1G068530.2 , HORVU2Hr1G068530.3 , HORVU2Hr1G068530.1
Wheat -
Populus -


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cDNA sequences
Sobic.006G049700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G222500 expressed protein -
2 Sobic.007G166400 mediator of RNA polymerase II transcription subunit 31, putative, expressed K15153: MED31, mediator of RNA polymerase II transcription subunit 31
3 Sobic.003G264200 Ser/Thr protein phosphatase family protein, putative, expressed K15498: serine/threonine-protein phosphatase 6 catalytic subunit
4 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
5 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
6 Sobic.004G226800 expressed protein -
7 Sobic.010G027600 transcription factor TFIIF, putative, expressed K11341: YEATS4, GAS41, YEATS domain-containing protein 4
8 Sobic.002G113900 lipid binding protein, putative, expressed -
9 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
10 Sobic.009G192000 transcription initiation factor IIF beta subunit, putative, expressed K03139: TFIIF2, GTF2F2, transcription initiation factor TFIIF subunit beta
11 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
12 Sobic.010G205300 secreted salivary protein, putative, expressed -
13 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
14 Sobic.001G234200 actin, putative, expressed K16615: actin-related protein 7, plant
15 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.004G232800 expressed protein -
17 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
18 Sobic.001G459100 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
19 Sobic.004G115350 - K12843: PRPF3, U4/U6 small nuclear ribonucleoprotein PRP3
20 Sobic.001G031100 dolichyl-phosphate beta-glycosyltransferase, putative, expressed K00721: dolichol-phosphate mannosyltransferase


Gene co-expression network
sample Sobic006G049700 Sobic006G049700 Sobic009G222500 Sobic009G222500 Sobic006G049700--Sobic009G222500 Sobic007G166400 Sobic007G166400 Sobic006G049700--Sobic007G166400 Sobic003G264200 Sobic003G264200 Sobic006G049700--Sobic003G264200 Sobic006G101700 Sobic006G101700 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic010G027600 Sobic010G027600 Sobic006G049700--Sobic010G027600 Sobic002G113900 Sobic002G113900 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic009G222500--Sobic006G049700 Sobic001G080700 Sobic001G080700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic004G066200 Sobic004G066200 Sobic009G222500--Sobic004G066200 Sobic009G222500--Sobic007G166400 Sobic009G222500--Sobic010G027600 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic007G166400--Sobic006G101700 Sobic007G166400--Sobic003G264200 Sobic007G166400--Sobic009G222500 Sobic007G166400--Sobic006G049700 Sobic007G166400--Sobic007G167900 Sobic007G166400--Sobic004G066200 Sobic006G044600 Sobic006G044600 Sobic007G166400--Sobic006G044600 Sobic008G153500 Sobic008G153500 Sobic007G166400--Sobic008G153500 Sobic001G114500 Sobic001G114500 Sobic007G166400--Sobic001G114500 Sobic001G031100 Sobic001G031100 Sobic003G264200--Sobic001G031100 Sobic003G264200--Sobic001G080700 Sobic003G264200--Sobic007G166400 Sobic003G264200--Sobic009G222500 Sobic003G264200--Sobic006G049700 Sobic003G264200--Sobic006G101700 Sobic002G047700 Sobic002G047700 Sobic003G264200--Sobic002G047700 Sobic009G165800 Sobic009G165800 Sobic003G264200--Sobic009G165800 Sobic007G166100 Sobic007G166100 Sobic003G264200--Sobic007G166100 Sobic006G101700--Sobic004G066200 Sobic006G101700--Sobic007G166400 Sobic001G085100 Sobic001G085100 Sobic006G101700--Sobic001G085100 Sobic006G101700--Sobic001G080700 Sobic006G101700--Sobic009G222500 Sobic006G101700--Sobic009G165800 Sobic002G192200 Sobic002G192200 Sobic006G101700--Sobic002G192200 Sobic006G101700--Sobic006G049700 Sobic001G512300 Sobic001G512300 Sobic006G101700--Sobic001G512300 Sobic007G167900--Sobic001G085100 Sobic009G192000 Sobic009G192000 Sobic007G167900--Sobic009G192000 Sobic004G092500 Sobic004G092500 Sobic007G167900--Sobic004G092500 Sobic001G206900 Sobic001G206900 Sobic007G167900--Sobic001G206900 Sobic007G167900--Sobic002G047700 Sobic007G167900--Sobic006G101700 Sobic010G020400 Sobic010G020400 Sobic007G167900--Sobic010G020400 Sobic007G167900--Sobic009G222500 Sobic001G341500 Sobic001G341500 Sobic007G167900--Sobic001G341500 Sobic004G226800--Sobic004G356900 Sobic004G226800--Sobic006G049700 Sobic002G256300 Sobic002G256300 Sobic004G226800--Sobic002G256300 Sobic004G226800--Sobic002G113900 Sobic010G193800 Sobic010G193800 Sobic004G226800--Sobic010G193800 Sobic003G226500 Sobic003G226500 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic002G204000 Sobic002G204000 Sobic004G226800--Sobic002G204000 Sobic004G232800 Sobic004G232800 Sobic004G226800--Sobic004G232800 Sobic010G018700 Sobic010G018700 Sobic010G027600--Sobic010G018700 Sobic010G027600--Sobic004G066200 Sobic010G027600--Sobic009G222500 Sobic002G352600 Sobic002G352600 Sobic010G027600--Sobic002G352600 Sobic009G179700 Sobic009G179700 Sobic010G027600--Sobic009G179700 Sobic002G110700 Sobic002G110700 Sobic010G027600--Sobic002G110700 Sobic010G027600--Sobic002G192200 Sobic009G228700 Sobic009G228700 Sobic010G027600--Sobic009G228700 Sobic010G027600--Sobic006G049700 Sobic006G270900 Sobic006G270900 Sobic002G113900--Sobic006G270900 Sobic009G004600 Sobic009G004600 Sobic002G113900--Sobic009G004600 Sobic002G113900--Sobic004G226800 Sobic002G113900--Sobic006G049700 Sobic002G113900--Sobic004G356900 Sobic004G301900 Sobic004G301900 Sobic002G113900--Sobic004G301900 Sobic007G019800 Sobic007G019800 Sobic002G113900--Sobic007G019800 Sobic004G104900 Sobic004G104900 Sobic002G113900--Sobic004G104900 Sobic002G268400 Sobic002G268400 Sobic002G113900--Sobic002G268400 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G356900--Sobic004G226800 Sobic004G356900--Sobic009G004600 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic004G356900--Sobic006G101700 Sobic004G356900--Sobic004G232800 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800
Octagon: transcription factors


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