Gene annotation
Transcriptome id Sobic.010G027600.2,Sobic.010G027600.1
Synonym Sb10g002520, TAF14B, GAS41
Functional annotation transcription factor TFIIF, putative, expressed
UniProt A0A194YI11 , A0A194YH01
Pfam PF03366
Panther DB PTHR23195 PTHR23195:SF26
NCBI CDD KOG3149; Transcription initiation factor IIF, auxiliary subunit
KEGG Orthology K11341; YEATS4, GAS41, YEATS domain-containing protein 4
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G45600 : YEATS family protein
RAP-DB (Rice) LOC_Os06g04580.1 : transcription factor TFIIF, putative, expressed
MaizeGDB (Corn) Zm00025a038309
Brachypodium KQK19953
Barley -
Wheat TraesCS7A02G076700
Populus PNT26460 , PNT26459


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
2 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
3 Sobic.009G222500 expressed protein -
4 Sobic.002G352600 expressed protein -
5 Sobic.009G179700 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
6 Sobic.002G110700 uncharacterized ACR, YggU family COG1872 containing protein, expressed K09131: uncharacterized protein
7 Sobic.002G192200 proteasome subunit, putative, expressed -
8 Sobic.009G228700 expressed protein -
9 Sobic.006G049700 SAM domain family protein, expressed -
10 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
12 Sobic.007G166100 no apical meristem protein, putative, expressed -
13 Sobic.006G101700 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
14 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
15 Sobic.007G167900 signal peptide peptidase domain containing protein, expressed K09598: signal peptide peptidase-like 3
16 Sobic.003G099100 ZOS9-05 - C2H2 zinc finger protein, expressed -
17 Sobic.009G123600 tungus CG8253-PA, putative, expressed -
18 Sobic.002G347000 WD domain, G-beta repeat domain containing protein, expressed K14963: WDR5, SWD3, COMPASS component SWD3
19 Sobic.002G059300 OsFBX181 - F-box domain containing protein, expressed -
20 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8


Gene co-expression network
sample Sobic010G027600 Sobic010G027600 Sobic010G018700 Sobic010G018700 Sobic010G027600--Sobic010G018700 Sobic004G066200 Sobic004G066200 Sobic010G027600--Sobic004G066200 Sobic009G222500 Sobic009G222500 Sobic010G027600--Sobic009G222500 Sobic002G352600 Sobic002G352600 Sobic010G027600--Sobic002G352600 Sobic009G179700 Sobic009G179700 Sobic010G027600--Sobic009G179700 Sobic002G110700 Sobic002G110700 Sobic010G027600--Sobic002G110700 Sobic002G192200 Sobic002G192200 Sobic010G027600--Sobic002G192200 Sobic009G228700 Sobic009G228700 Sobic010G027600--Sobic009G228700 Sobic006G049700 Sobic006G049700 Sobic010G027600--Sobic006G049700 Sobic001G356600 Sobic001G356600 Sobic010G018700--Sobic001G356600 Sobic010G018700--Sobic009G179700 Sobic010G018700--Sobic010G027600 Sobic004G104900 Sobic004G104900 Sobic010G018700--Sobic004G104900 Sobic003G439800 Sobic003G439800 Sobic010G018700--Sobic003G439800 Sobic009G058500 Sobic009G058500 Sobic010G018700--Sobic009G058500 Sobic004G141700 Sobic004G141700 Sobic010G018700--Sobic004G141700 Sobic010G193800 Sobic010G193800 Sobic010G018700--Sobic010G193800 Sobic010G018700--Sobic004G066200 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic003G248200 Sobic003G248200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300 Sobic009G075800 Sobic009G075800 Sobic009G222500--Sobic009G075800 Sobic009G222500--Sobic006G049700 Sobic009G222500--Sobic001G080700 Sobic009G222500--Sobic006G101700 Sobic009G222500--Sobic004G066200 Sobic007G166400 Sobic007G166400 Sobic009G222500--Sobic007G166400 Sobic009G222500--Sobic010G027600 Sobic003G264200 Sobic003G264200 Sobic009G222500--Sobic003G264200 Sobic004G235000 Sobic004G235000 Sobic009G222500--Sobic004G235000 Sobic003G015900 Sobic003G015900 Sobic002G352600--Sobic003G015900 Sobic002G352600--Sobic010G027600 Sobic002G352600--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic002G352600--Sobic004G121100 Sobic009G217100 Sobic009G217100 Sobic002G352600--Sobic009G217100 Sobic001G121200 Sobic001G121200 Sobic002G352600--Sobic001G121200 Sobic010G000900 Sobic010G000900 Sobic002G352600--Sobic010G000900 Sobic002G352600--Sobic004G066200 Sobic002G352600--Sobic003G248200 Sobic002G350300 Sobic002G350300 Sobic009G179700--Sobic002G350300 Sobic009G179700--Sobic001G356600 Sobic007G078600 Sobic007G078600 Sobic009G179700--Sobic007G078600 Sobic009G179700--Sobic010G018700 Sobic008G179700 Sobic008G179700 Sobic009G179700--Sobic008G179700 Sobic007G078500 Sobic007G078500 Sobic009G179700--Sobic007G078500 Sobic003G029100 Sobic003G029100 Sobic009G179700--Sobic003G029100 Sobic007G061000 Sobic007G061000 Sobic009G179700--Sobic007G061000 Sobic001G512700 Sobic001G512700 Sobic009G179700--Sobic001G512700 Sobic009G165800 Sobic009G165800 Sobic002G110700--Sobic009G165800 Sobic002G110700--Sobic010G027600 Sobic002G110700--Sobic004G121100 Sobic010G184100 Sobic010G184100 Sobic002G110700--Sobic010G184100 Sobic002G110700--Sobic001G080700 Sobic002G110700--Sobic007G078500 Sobic007G166100 Sobic007G166100 Sobic002G110700--Sobic007G166100 Sobic003G250500 Sobic003G250500 Sobic002G110700--Sobic003G250500 Sobic002G113900 Sobic002G113900 Sobic002G110700--Sobic002G113900 Sobic002G192200--Sobic006G101700 Sobic002G192200--Sobic010G027600 Sobic002G192200--Sobic009G222500 Sobic002G192200--Sobic004G066200 Sobic002G192200--Sobic007G166400 Sobic001G114500 Sobic001G114500 Sobic002G192200--Sobic001G114500 Sobic001G522600 Sobic001G522600 Sobic002G192200--Sobic001G522600 Sobic002G192200--Sobic006G049700 Sobic007G225100 Sobic007G225100 Sobic002G192200--Sobic007G225100 Sobic009G228700--Sobic004G066200 Sobic009G207000 Sobic009G207000 Sobic009G228700--Sobic009G207000 Sobic009G228700--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic009G228700--Sobic001G323000 Sobic009G228700--Sobic001G356600 Sobic006G249700 Sobic006G249700 Sobic009G228700--Sobic006G249700 Sobic006G148200 Sobic006G148200 Sobic009G228700--Sobic006G148200 Sobic003G312200 Sobic003G312200 Sobic009G228700--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic009G228700--Sobic001G124200 Sobic006G049700--Sobic009G222500 Sobic006G049700--Sobic007G166400 Sobic006G049700--Sobic003G264200 Sobic006G049700--Sobic006G101700 Sobic007G167900 Sobic007G167900 Sobic006G049700--Sobic007G167900 Sobic004G226800 Sobic004G226800 Sobic006G049700--Sobic004G226800 Sobic006G049700--Sobic010G027600 Sobic006G049700--Sobic002G113900 Sobic004G356900 Sobic004G356900 Sobic006G049700--Sobic004G356900
Octagon: transcription factors


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