Gene annotation
Transcriptome id Sobic.010G130000.1
Synonym Sb10g011810
Functional annotation expressed protein
UniProt C5Z1L0
Pfam PF04652
Panther DB PTHR12741
NCBI CDD KOG0917; Uncharacterized conserved protein
KEGG Orthology K12199; VTA1, vacuolar protein sorting-associated protein VTA1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26750 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os06g20390.1 : expressed protein
MaizeGDB (Corn) Zm00025a050594 , Zm00025a042792
Brachypodium KQK18485
Barley HORVU7Hr1G045860.4 , HORVU7Hr1G045860.5 , HORVU7Hr1G045860.1 , HORVU7Hr1G045860.2 , HORVU7Hr1G045860.3
Wheat TraesCS7B02G190400 , TraesCS7A02G223600 , TraesCS7D02G225200
Populus -


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cDNA sequences
Sobic.010G130000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
2 Sobic.010G278200 expressed protein -
3 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
4 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
5 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
6 Sobic.001G124200 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
7 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
8 Sobic.001G085100 expressed protein -
9 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
10 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
11 Sobic.006G194500 expressed protein -
12 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
13 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
14 Sobic.006G092400 calmodulin binding protein, putative, expressed -
15 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
16 Sobic.008G110600 expressed protein -
17 Sobic.003G332500 EAP30/Vps36 family domain containing protein, expressed K12190: VPS36, ESCRT-II complex subunit VPS36
18 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
19 Sobic.002G283600 AGAP005770-PA, putative, expressed -
20 Sobic.010G205800 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic010G130000 Sobic010G130000 Sobic006G033200 Sobic006G033200 Sobic010G130000--Sobic006G033200 Sobic010G278200 Sobic010G278200 Sobic010G130000--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic010G130000--Sobic009G138100 Sobic006G034000 Sobic006G034000 Sobic010G130000--Sobic006G034000 Sobic003G312200 Sobic003G312200 Sobic010G130000--Sobic003G312200 Sobic001G124200 Sobic001G124200 Sobic010G130000--Sobic001G124200 Sobic001G390800 Sobic001G390800 Sobic010G130000--Sobic001G390800 Sobic001G085100 Sobic001G085100 Sobic010G130000--Sobic001G085100 Sobic008G124900 Sobic008G124900 Sobic010G130000--Sobic008G124900 Sobic006G033200--Sobic010G130000 Sobic006G033200--Sobic008G124900 Sobic006G033200--Sobic010G278200 Sobic006G033200--Sobic009G138100 Sobic007G093800 Sobic007G093800 Sobic006G033200--Sobic007G093800 Sobic004G202500 Sobic004G202500 Sobic006G033200--Sobic004G202500 Sobic007G179800 Sobic007G179800 Sobic006G033200--Sobic007G179800 Sobic003G302900 Sobic003G302900 Sobic006G033200--Sobic003G302900 Sobic006G033200--Sobic003G312200 Sobic010G147100 Sobic010G147100 Sobic010G278200--Sobic010G147100 Sobic010G278200--Sobic009G138100 Sobic010G278200--Sobic010G130000 Sobic010G278200--Sobic001G124200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic003G118200 Sobic003G118200 Sobic010G278200--Sobic003G118200 Sobic003G316500 Sobic003G316500 Sobic010G278200--Sobic003G316500 Sobic010G278200--Sobic008G124900 Sobic009G138100--Sobic010G278200 Sobic009G138100--Sobic010G130000 Sobic003G248200 Sobic003G248200 Sobic009G138100--Sobic003G248200 Sobic009G138100--Sobic001G124200 Sobic009G138100--Sobic006G033200 Sobic009G228700 Sobic009G228700 Sobic009G138100--Sobic009G228700 Sobic004G066200 Sobic004G066200 Sobic009G138100--Sobic004G066200 Sobic009G219000 Sobic009G219000 Sobic009G138100--Sobic009G219000 Sobic001G323000 Sobic001G323000 Sobic009G138100--Sobic001G323000 Sobic006G034000--Sobic003G312200 Sobic006G034000--Sobic001G323000 Sobic003G436300 Sobic003G436300 Sobic006G034000--Sobic003G436300 Sobic006G148200 Sobic006G148200 Sobic006G034000--Sobic006G148200 Sobic001G180900 Sobic001G180900 Sobic006G034000--Sobic001G180900 Sobic006G034000--Sobic010G130000 Sobic001G091300 Sobic001G091300 Sobic006G034000--Sobic001G091300 Sobic008G110600 Sobic008G110600 Sobic006G034000--Sobic008G110600 Sobic006G034000--Sobic009G228700 Sobic003G312200--Sobic006G034000 Sobic003G312200--Sobic001G091300 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic003G312200--Sobic001G085100 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500 Sobic010G205800 Sobic010G205800 Sobic001G124200--Sobic010G205800 Sobic010G020300 Sobic010G020300 Sobic001G124200--Sobic010G020300 Sobic003G155900 Sobic003G155900 Sobic001G124200--Sobic003G155900 Sobic004G039600 Sobic004G039600 Sobic001G124200--Sobic004G039600 Sobic001G124200--Sobic010G278200 Sobic007G132100 Sobic007G132100 Sobic001G124200--Sobic007G132100 Sobic001G124200--Sobic009G138100 Sobic001G124200--Sobic001G390800 Sobic001G124200--Sobic009G228700 Sobic001G268200 Sobic001G268200 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic006G101700 Sobic006G101700 Sobic001G085100--Sobic006G101700 Sobic001G085100--Sobic001G261436 Sobic001G085100--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G085100--Sobic007G167900 Sobic001G085100--Sobic001G206900 Sobic001G047400 Sobic001G047400 Sobic001G085100--Sobic001G047400 Sobic001G085100--Sobic004G066200 Sobic001G085100--Sobic001G091300 Sobic003G012200 Sobic003G012200 Sobic001G085100--Sobic003G012200 Sobic008G124900--Sobic007G093800 Sobic003G119700 Sobic003G119700 Sobic008G124900--Sobic003G119700 Sobic008G124900--Sobic006G033200 Sobic001G096000 Sobic001G096000 Sobic008G124900--Sobic001G096000 Sobic008G124900--Sobic010G278200 Sobic006G131000 Sobic006G131000 Sobic008G124900--Sobic006G131000 Sobic003G104000 Sobic003G104000 Sobic008G124900--Sobic003G104000 Sobic010G249100 Sobic010G249100 Sobic008G124900--Sobic010G249100 Sobic009G068500 Sobic009G068500 Sobic008G124900--Sobic009G068500
Octagon: transcription factors


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