Gene annotation
Transcriptome id Sobic.003G302900.1
Synonym Sb03g035180
Functional annotation transcriptional regulator family protein, putative, expressed
UniProt C5XKT4
Pfam PF07818
Panther DB PTHR13464
NCBI CDD KOG2959; Transcriptional regulator
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G29220 : transcriptional regulator family protein
RAP-DB (Rice) LOC_Os01g55490.1 : transcriptional regulator family protein, putative, expressed
MaizeGDB (Corn) Zm00025a027492 , Zm00025a039982
Brachypodium KQK09835 , PNT72889 , PNT72890 , PNT72891
Barley HORVU3Hr1G073170.3 , HORVU3Hr1G073170.2 , HORVU3Hr1G073170.1 , HORVU3Hr1G073170.7 , HORVU3Hr1G073170.6 , HORVU3Hr1G073170.5 , HORVU3Hr1G073170.4
Wheat TraesCS3B02G330700 , TraesCS3A02G305800 , TraesCS3D02G296100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
2 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
4 Sobic.001G107600 - K18328: lariat debranching enzyme
5 Sobic.010G278200 expressed protein -
6 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
7 Sobic.003G264100 - K10843: ERCC3, DNA excision repair protein ERCC-3
8 Sobic.008G047400 OsFBT14 - F-box and tubby domain containing protein, expressed -
9 Sobic.008G093000 ABC transporter, ATP-binding protein, putative, expressed K06185: ATP-binding cassette, subfamily F, member 2
10 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
11 Sobic.007G179800 TBC domain containing protein, expressed -
12 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
13 Sobic.009G068500 expressed protein -
14 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
15 Sobic.003G365300 sorting nexin 1, putative, expressed K17917: sorting nexin-1/2
16 Sobic.009G109925 - -
17 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase
18 Sobic.007G093800 expressed protein -
19 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
20 Sobic.001G203900 OsGrx_S17 - glutaredoxin subgroup II, expressed -


Gene co-expression network
sample Sobic003G302900 Sobic003G302900 Sobic006G033200 Sobic006G033200 Sobic003G302900--Sobic006G033200 Sobic002G311100 Sobic002G311100 Sobic003G302900--Sobic002G311100 Sobic010G147100 Sobic010G147100 Sobic003G302900--Sobic010G147100 Sobic001G107600 Sobic001G107600 Sobic003G302900--Sobic001G107600 Sobic010G278200 Sobic010G278200 Sobic003G302900--Sobic010G278200 Sobic007G203300 Sobic007G203300 Sobic003G302900--Sobic007G203300 Sobic003G264100 Sobic003G264100 Sobic003G302900--Sobic003G264100 Sobic008G047400 Sobic008G047400 Sobic003G302900--Sobic008G047400 Sobic008G093000 Sobic008G093000 Sobic003G302900--Sobic008G093000 Sobic010G130000 Sobic010G130000 Sobic006G033200--Sobic010G130000 Sobic008G124900 Sobic008G124900 Sobic006G033200--Sobic008G124900 Sobic006G033200--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic006G033200--Sobic009G138100 Sobic007G093800 Sobic007G093800 Sobic006G033200--Sobic007G093800 Sobic004G202500 Sobic004G202500 Sobic006G033200--Sobic004G202500 Sobic007G179800 Sobic007G179800 Sobic006G033200--Sobic007G179800 Sobic006G033200--Sobic003G302900 Sobic003G312200 Sobic003G312200 Sobic006G033200--Sobic003G312200 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic010G074300 Sobic010G074300 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G147100--Sobic010G278200 Sobic010G147100--Sobic010G074300 Sobic003G313500 Sobic003G313500 Sobic010G147100--Sobic003G313500 Sobic001G390800 Sobic001G390800 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic001G268200 Sobic001G268200 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic001G050200 Sobic001G050200 Sobic001G107600--Sobic001G050200 Sobic010G228400 Sobic010G228400 Sobic001G107600--Sobic010G228400 Sobic001G107600--Sobic001G390800 Sobic003G365300 Sobic003G365300 Sobic001G107600--Sobic003G365300 Sobic006G115600 Sobic006G115600 Sobic001G107600--Sobic006G115600 Sobic004G264400 Sobic004G264400 Sobic001G107600--Sobic004G264400 Sobic002G427050 Sobic002G427050 Sobic001G107600--Sobic002G427050 Sobic003G372500 Sobic003G372500 Sobic001G107600--Sobic003G372500 Sobic010G227100 Sobic010G227100 Sobic001G107600--Sobic010G227100 Sobic010G278200--Sobic010G147100 Sobic010G278200--Sobic009G138100 Sobic010G278200--Sobic010G130000 Sobic001G124200 Sobic001G124200 Sobic010G278200--Sobic001G124200 Sobic010G278200--Sobic006G033200 Sobic005G126600 Sobic005G126600 Sobic010G278200--Sobic005G126600 Sobic010G278200--Sobic003G118200 Sobic010G278200--Sobic003G316500 Sobic010G278200--Sobic008G124900 Sobic007G056600 Sobic007G056600 Sobic007G203300--Sobic007G056600 Sobic007G203300--Sobic006G033200 Sobic006G180000 Sobic006G180000 Sobic007G203300--Sobic006G180000 Sobic007G203300--Sobic003G302900 Sobic004G261600 Sobic004G261600 Sobic007G203300--Sobic004G261600 Sobic003G110000 Sobic003G110000 Sobic007G203300--Sobic003G110000 Sobic009G109925 Sobic009G109925 Sobic007G203300--Sobic009G109925 Sobic006G126100 Sobic006G126100 Sobic007G203300--Sobic006G126100 Sobic001G079200 Sobic001G079200 Sobic007G203300--Sobic001G079200 Sobic001G333100 Sobic001G333100 Sobic003G264100--Sobic001G333100 Sobic003G264100--Sobic009G109925 Sobic006G196300 Sobic006G196300 Sobic003G264100--Sobic006G196300 Sobic003G264100--Sobic002G311100 Sobic003G264100--Sobic006G180000 Sobic009G068500 Sobic009G068500 Sobic003G264100--Sobic009G068500 Sobic001G227400 Sobic001G227400 Sobic003G264100--Sobic001G227400 Sobic001G192000 Sobic001G192000 Sobic003G264100--Sobic001G192000 Sobic003G264100--Sobic003G195000 Sobic008G047400--Sobic008G124900 Sobic008G047400--Sobic010G278200 Sobic008G047400--Sobic006G033200 Sobic008G047400--Sobic004G202500 Sobic008G047400--Sobic003G302900 Sobic008G047400--Sobic010G074300 Sobic004G255700 Sobic004G255700 Sobic008G047400--Sobic004G255700 Sobic008G047400--Sobic010G147100 Sobic003G309200 Sobic003G309200 Sobic008G047400--Sobic003G309200 Sobic001G199100 Sobic001G199100 Sobic008G093000--Sobic001G199100 Sobic010G064600 Sobic010G064600 Sobic008G093000--Sobic010G064600 Sobic001G301700 Sobic001G301700 Sobic008G093000--Sobic001G301700 Sobic008G093000--Sobic003G312200 Sobic004G275700 Sobic004G275700 Sobic008G093000--Sobic004G275700 Sobic010G229400 Sobic010G229400 Sobic008G093000--Sobic010G229400 Sobic009G207000 Sobic009G207000 Sobic008G093000--Sobic009G207000 Sobic003G087000 Sobic003G087000 Sobic008G093000--Sobic003G087000 Sobic002G244100 Sobic002G244100 Sobic008G093000--Sobic002G244100
Octagon: transcription factors


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