Gene annotation
Transcriptome id Sobic.007G179800.1
Synonym Sb07g025070
Functional annotation TBC domain containing protein, expressed
UniProt C5YH55
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF277
NCBI CDD KOG2197; Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41940 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os08g43380.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047727 , Zm00025a034198 , Zm00025a005711 , Zm00025a014410
Brachypodium KQJ91147 , KQJ91146 , KQJ99269
Barley HORVU7Hr1G057010.2 , HORVU7Hr1G057010.3 , HORVU7Hr1G057010.1 , HORVU5Hr1G081040.5
Wheat TraesCS7A02G270600 , TraesCS7B02G168700 , TraesCS7D02G271000
Populus -


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cDNA sequences
Sobic.007G179800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G092400 calmodulin binding protein, putative, expressed -
2 Sobic.001G121200 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.006G033200 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
4 Sobic.003G220800 RNA recognition motif containing protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
5 Sobic.010G020300 spastin, putative, expressed K13254: spastin
6 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
7 Sobic.002G311100 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.010G147100 VHS and GAT domain containing protein, expressed -
9 Sobic.003G312200 signal recognition particle 54 kDa protein, putative, expressed K03106: SRP54, signal recognition particle subunit SRP54
10 Sobic.001G241100 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
11 Sobic.002G352600 expressed protein -
12 Sobic.001G007000 -(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed K19269: PGP, phosphoglycolate phosphatase
13 Sobic.001G260400 transcription initiation factor, putative, expressed K03136: TFIIE1, GTF2E1, TFA1, transcription initiation factor TFIIE subunit alpha
14 Sobic.010G074300 smr domain containing protein, expressed -
15 Sobic.010G278200 expressed protein -
16 Sobic.003G302900 transcriptional regulator family protein, putative, expressed -
17 Sobic.001G079200 STE_MEKK_ste11_MAP3K.15 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
18 Sobic.007G093800 expressed protein -
19 Sobic.010G130000 expressed protein K12199: VTA1, vacuolar protein sorting-associated protein VTA1
20 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase


Gene co-expression network
sample Sobic007G179800 Sobic007G179800 Sobic006G092400 Sobic006G092400 Sobic007G179800--Sobic006G092400 Sobic001G121200 Sobic001G121200 Sobic007G179800--Sobic001G121200 Sobic006G033200 Sobic006G033200 Sobic007G179800--Sobic006G033200 Sobic003G220800 Sobic003G220800 Sobic007G179800--Sobic003G220800 Sobic010G020300 Sobic010G020300 Sobic007G179800--Sobic010G020300 Sobic001G390800 Sobic001G390800 Sobic007G179800--Sobic001G390800 Sobic002G311100 Sobic002G311100 Sobic007G179800--Sobic002G311100 Sobic010G147100 Sobic010G147100 Sobic007G179800--Sobic010G147100 Sobic003G312200 Sobic003G312200 Sobic007G179800--Sobic003G312200 Sobic006G092400--Sobic007G179800 Sobic002G130800 Sobic002G130800 Sobic006G092400--Sobic002G130800 Sobic006G209400 Sobic006G209400 Sobic006G092400--Sobic006G209400 Sobic010G074300 Sobic010G074300 Sobic006G092400--Sobic010G074300 Sobic004G235000 Sobic004G235000 Sobic006G092400--Sobic004G235000 Sobic001G508100 Sobic001G508100 Sobic006G092400--Sobic001G508100 Sobic006G092400--Sobic003G220800 Sobic006G090000 Sobic006G090000 Sobic006G092400--Sobic006G090000 Sobic006G092400--Sobic010G147100 Sobic001G121200--Sobic001G390800 Sobic010G205800 Sobic010G205800 Sobic001G121200--Sobic010G205800 Sobic001G268200 Sobic001G268200 Sobic001G121200--Sobic001G268200 Sobic009G113000 Sobic009G113000 Sobic001G121200--Sobic009G113000 Sobic002G111000 Sobic002G111000 Sobic001G121200--Sobic002G111000 Sobic001G121200--Sobic010G147100 Sobic001G207000 Sobic001G207000 Sobic001G121200--Sobic001G207000 Sobic001G146800 Sobic001G146800 Sobic001G121200--Sobic001G146800 Sobic009G056200 Sobic009G056200 Sobic001G121200--Sobic009G056200 Sobic010G130000 Sobic010G130000 Sobic006G033200--Sobic010G130000 Sobic008G124900 Sobic008G124900 Sobic006G033200--Sobic008G124900 Sobic010G278200 Sobic010G278200 Sobic006G033200--Sobic010G278200 Sobic009G138100 Sobic009G138100 Sobic006G033200--Sobic009G138100 Sobic007G093800 Sobic007G093800 Sobic006G033200--Sobic007G093800 Sobic004G202500 Sobic004G202500 Sobic006G033200--Sobic004G202500 Sobic006G033200--Sobic007G179800 Sobic003G302900 Sobic003G302900 Sobic006G033200--Sobic003G302900 Sobic006G033200--Sobic003G312200 Sobic009G084000 Sobic009G084000 Sobic003G220800--Sobic009G084000 Sobic001G100900 Sobic001G100900 Sobic003G220800--Sobic001G100900 Sobic003G043300 Sobic003G043300 Sobic003G220800--Sobic003G043300 Sobic003G220800--Sobic010G074300 Sobic001G241100 Sobic001G241100 Sobic003G220800--Sobic001G241100 Sobic002G359400 Sobic002G359400 Sobic003G220800--Sobic002G359400 Sobic002G047700 Sobic002G047700 Sobic003G220800--Sobic002G047700 Sobic003G220800--Sobic006G092400 Sobic010G147000 Sobic010G147000 Sobic003G220800--Sobic010G147000 Sobic001G124200 Sobic001G124200 Sobic010G020300--Sobic001G124200 Sobic010G020300--Sobic010G205800 Sobic004G065000 Sobic004G065000 Sobic010G020300--Sobic004G065000 Sobic010G020300--Sobic001G390800 Sobic003G352200 Sobic003G352200 Sobic010G020300--Sobic003G352200 Sobic004G177300 Sobic004G177300 Sobic010G020300--Sobic004G177300 Sobic010G020300--Sobic010G278200 Sobic001G227400 Sobic001G227400 Sobic010G020300--Sobic001G227400 Sobic010G020300--Sobic001G121200 Sobic001G390800--Sobic001G268200 Sobic001G390800--Sobic001G121200 Sobic003G313500 Sobic003G313500 Sobic001G390800--Sobic003G313500 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic002G311100--Sobic010G147100 Sobic009G074400 Sobic009G074400 Sobic002G311100--Sobic009G074400 Sobic010G013200 Sobic010G013200 Sobic002G311100--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic002G311100--Sobic003G264100 Sobic010G131900 Sobic010G131900 Sobic002G311100--Sobic010G131900 Sobic002G311100--Sobic010G074300 Sobic009G143700 Sobic009G143700 Sobic002G311100--Sobic009G143700 Sobic009G201300 Sobic009G201300 Sobic002G311100--Sobic009G201300 Sobic003G195000 Sobic003G195000 Sobic002G311100--Sobic003G195000 Sobic003G316500 Sobic003G316500 Sobic010G147100--Sobic003G316500 Sobic010G147100--Sobic010G278200 Sobic010G147100--Sobic010G074300 Sobic010G147100--Sobic003G313500 Sobic010G147100--Sobic001G390800 Sobic010G147100--Sobic002G311100 Sobic009G053900 Sobic009G053900 Sobic010G147100--Sobic009G053900 Sobic010G147100--Sobic001G268200 Sobic003G118200 Sobic003G118200 Sobic010G147100--Sobic003G118200 Sobic006G034000 Sobic006G034000 Sobic003G312200--Sobic006G034000 Sobic001G091300 Sobic001G091300 Sobic003G312200--Sobic001G091300 Sobic001G323000 Sobic001G323000 Sobic003G312200--Sobic001G323000 Sobic001G206900 Sobic001G206900 Sobic003G312200--Sobic001G206900 Sobic009G228700 Sobic009G228700 Sobic003G312200--Sobic009G228700 Sobic001G261436 Sobic001G261436 Sobic003G312200--Sobic001G261436 Sobic001G085100 Sobic001G085100 Sobic003G312200--Sobic001G085100 Sobic003G312200--Sobic010G130000 Sobic005G074500 Sobic005G074500 Sobic003G312200--Sobic005G074500
Octagon: transcription factors


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