Gene annotation
Transcriptome id Sobic.002G207300.2,Sobic.002G207300.1
Synonym TET8, Sb02g025180
Functional annotation tetraspanin family protein, putative, expressed
UniProt C5XCZ5
Pfam PF00335
Panther DB PTHR32191 PTHR32191:SF2
NCBI CDD KOG3882; Tetraspanin family integral membrane protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G23810 : tetraspanin8
RAP-DB (Rice) LOC_Os09g25760.1 : tetraspanin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a005827 , Zm00025a047075
Brachypodium KQJ90303
Barley HORVU5Hr1G064020.3 , HORVU5Hr1G064020.2 , HORVU5Hr1G064020.1
Wheat TraesCS7D02G488300 , TraesCS5B02G219700 , TraesCS7A02G500900 , TraesCS7B02G408200 , TraesCS5D02G228600 , TraesCS5A02G220600
Populus -


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cDNA sequences
Sobic.002G207300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
2 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
3 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
4 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
5 Sobic.001G118900 DUF292 domain containing protein, expressed -
6 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
7 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
8 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.007G145700 expressed protein -
11 Sobic.001G370600 expressed protein -
12 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
13 Sobic.006G210300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.001G161200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
15 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
16 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
17 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
18 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33
19 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
20 Sobic.009G100500 WRKY53, expressed K13424: WRKY transcription factor 33


Gene co-expression network
sample Sobic002G207300 Sobic002G207300 Sobic004G065900 Sobic004G065900 Sobic002G207300--Sobic004G065900 Sobic002G367900 Sobic002G367900 Sobic002G207300--Sobic002G367900 Sobic007G201100 Sobic007G201100 Sobic002G207300--Sobic007G201100 Sobic006G146500 Sobic006G146500 Sobic002G207300--Sobic006G146500 Sobic001G118900 Sobic001G118900 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G294600 Sobic002G294600 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic001G095700 Sobic001G095700 Sobic002G207300--Sobic001G095700 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic004G065900--Sobic002G367900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic004G065900--Sobic006G146500 Sobic004G065900--Sobic007G201100 Sobic007G145700 Sobic007G145700 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400 Sobic002G367900--Sobic002G207300 Sobic002G367900--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic002G367900--Sobic003G268900 Sobic002G367900--Sobic001G095700 Sobic001G462800 Sobic001G462800 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G197600 Sobic002G197600 Sobic002G367900--Sobic002G197600 Sobic006G210300 Sobic006G210300 Sobic002G367900--Sobic006G210300 Sobic004G244100 Sobic004G244100 Sobic002G367900--Sobic004G244100 Sobic007G201100--Sobic002G207300 Sobic007G201100--Sobic004G065900 Sobic007G201100--Sobic003G425200 Sobic003G341100 Sobic003G341100 Sobic007G201100--Sobic003G341100 Sobic007G077100 Sobic007G077100 Sobic007G201100--Sobic007G077100 Sobic009G217500 Sobic009G217500 Sobic007G201100--Sobic009G217500 Sobic007G201100--Sobic006G146500 Sobic007G201100--Sobic002G367900 Sobic007G201100--Sobic007G145700 Sobic006G146500--Sobic003G425200 Sobic006G146500--Sobic004G065900 Sobic006G146500--Sobic007G145700 Sobic006G146500--Sobic003G341100 Sobic006G146500--Sobic002G207300 Sobic006G146500--Sobic002G294600 Sobic006G146500--Sobic007G201100 Sobic006G146500--Sobic002G367900 Sobic001G081600 Sobic001G081600 Sobic006G146500--Sobic001G081600 Sobic001G118900--Sobic004G065900 Sobic001G161200 Sobic001G161200 Sobic001G118900--Sobic001G161200 Sobic001G118900--Sobic002G367900 Sobic001G118900--Sobic002G207300 Sobic004G006500 Sobic004G006500 Sobic001G118900--Sobic004G006500 Sobic001G118900--Sobic002G294600 Sobic002G418900 Sobic002G418900 Sobic001G118900--Sobic002G418900 Sobic001G095750 Sobic001G095750 Sobic001G118900--Sobic001G095750 Sobic001G118900--Sobic001G462800 Sobic003G425200--Sobic006G146500 Sobic003G425200--Sobic003G341100 Sobic003G425200--Sobic007G201100 Sobic003G425200--Sobic002G207300 Sobic007G011000 Sobic007G011000 Sobic003G425200--Sobic007G011000 Sobic003G425200--Sobic004G065900 Sobic001G370600 Sobic001G370600 Sobic003G425200--Sobic001G370600 Sobic003G425200--Sobic007G145700 Sobic002G118600 Sobic002G118600 Sobic003G425200--Sobic002G118600 Sobic002G294600--Sobic007G145700 Sobic002G294600--Sobic001G462800 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G217100 Sobic002G217100 Sobic002G294600--Sobic002G217100 Sobic002G294600--Sobic003G341100 Sobic002G294600--Sobic006G146500 Sobic002G294600--Sobic001G118900 Sobic001G287600 Sobic001G287600 Sobic001G410100--Sobic001G287600 Sobic001G410100--Sobic002G207300 Sobic001G410100--Sobic003G341100 Sobic001G410100--Sobic007G011000 Sobic009G100500 Sobic009G100500 Sobic001G410100--Sobic009G100500 Sobic001G410100--Sobic002G118600 Sobic009G044400 Sobic009G044400 Sobic001G410100--Sobic009G044400 Sobic007G212200 Sobic007G212200 Sobic001G410100--Sobic007G212200 Sobic001G410100--Sobic004G065900 Sobic001G095700--Sobic004G065900 Sobic001G095700--Sobic003G268900 Sobic001G095700--Sobic002G294600 Sobic001G095700--Sobic002G367900 Sobic001G095700--Sobic007G145700 Sobic006G273800 Sobic006G273800 Sobic001G095700--Sobic006G273800 Sobic007G051800 Sobic007G051800 Sobic001G095700--Sobic007G051800 Sobic001G064900 Sobic001G064900 Sobic001G095700--Sobic001G064900 Sobic001G095700--Sobic003G341100
Octagon: transcription factors


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