Gene annotation
Transcriptome id Sobic.004G086800.1
Synonym KCS11, Sb04g007190
Functional annotation 3-ketoacyl-CoA synthase, putative, expressed
UniProt C5XXY2
Pfam PF08541 PF08392
Panther DB PTHR31561 PTHR31561:SF8
NCBI CDD -
KEGG Orthology K15397; 3-ketoacyl-CoA synthase
Gene Ontology GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups GO:0008610lipid biosynthetic process GO:0016020membrane GO:0006633fatty acid biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G26640 : 3-ketoacyl-CoA synthase 11
RAP-DB (Rice) LOC_Os06g39750.1 : 3-ketoacyl-CoA synthase, putative, expressed
MaizeGDB (Corn) Zm00025a051234 , Zm00025a020257 , Zm00025a036645 , Zm00025a001551 , Zm00025a013566 , Zm00025a029505 , Zm00025a044614 , Zm00025a053041 , Zm00025a044659 , Zm00025a006916 , Zm00025a028878 , Zm00025a032652 , Zm00025a017777 , Zm00025a052892 , Zm00025a001341 , Zm00025a021922 , Zm00025a000774 , Zm00025a025466 , Zm00025a028880
Brachypodium KQK04750 , KQK04806 , KQJ93957 , KQJ96727 , KQJ88016 , KQK18680 , PNT67097 , PNT66146 , KQK22844 , PNT75706 , KQK01599 , KQK17805
Barley HORVU6Hr1G073300.1 , HORVU4Hr1G076940.1 , HORVU4Hr1G067340.4 , HORVU1Hr1G089710.1 , HORVU1Hr1G089710.2 , HORVU1Hr1G089710.3 , HORVU4Hr1G073840.2 , HORVU4Hr1G073840.3 , HORVU4Hr1G073840.4 , HORVU4Hr1G073840.5 , HORVU4Hr1G073840.6 , HORVU4Hr1G073840.8 , HORVU1Hr1G086760.1 , HORVU7Hr1G042070.2 , HORVU7Hr1G042070.3 , HORVU7Hr1G042070.1 , HORVU7Hr1G084610.10 , HORVU7Hr1G084610.11 , HORVU4Hr1G067340.2 , HORVU4Hr1G067340.3 , HORVU4Hr1G067340.1 , HORVU7Hr1G084610.1 , HORVU7Hr1G084610.2 , HORVU7Hr1G084610.3 , HORVU7Hr1G084610.4 , HORVU7Hr1G084610.5 , HORVU7Hr1G084610.6 , HORVU7Hr1G084610.7 , HORVU7Hr1G084610.8 , HORVU7Hr1G084610.9 , HORVU1Hr1G090730.1 , HORVU7Hr1G006910.1 , HORVU7Hr1G006910.2 , HORVU4Hr1G076940.4 , HORVU4Hr1G076940.3 , HORVU4Hr1G063420.5 , HORVU4Hr1G063420.3 , HORVU4Hr1G063420.2 , HORVU4Hr1G063420.1
Wheat TraesCS4D02G296400 , TraesCS4A02G065300 , TraesCS4D02G242200 , TraesCS4D02G277300 , TraesCS6B02G473900 , TraesCS6A02G415500 , TraesCS6A02G415500 , TraesCS4A02G025300 , TraesCS6A02G177700 , TraesCS4B02G278800 , TraesCS4A02G007400
Populus -


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cDNA sequences
Sobic.004G086800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G010400 zinc finger, RING-type, putative, expressed -
2 Sobic.003G416500 SRC2 protein, putative, expressed -
3 Sobic.006G259000 AP2 domain containing protein, expressed K09286: EREBP-like factor
4 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
5 Sobic.002G323900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PRAS-rich protein, putative, expressed -
6 Sobic.001G489500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.010G102000 U-box protein CMPG1, putative, expressed -
8 Sobic.002G138700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C2 domain containing protein, putative, expressed -
9 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
10 Sobic.002G207300 tetraspanin family protein, putative, expressed -
11 Sobic.010G105300 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
12 Sobic.001G370600 expressed protein -
13 Sobic.001G064900 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
14 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
15 Sobic.009G217500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.18 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
16 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
17 Sobic.007G077100 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
18 Sobic.010G023200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.007G145700 expressed protein -
20 Sobic.002G341900 - -


Gene co-expression network
sample Sobic004G086800 Sobic004G086800 Sobic009G010400 Sobic009G010400 Sobic004G086800--Sobic009G010400 Sobic003G416500 Sobic003G416500 Sobic004G086800--Sobic003G416500 Sobic006G259000 Sobic006G259000 Sobic004G086800--Sobic006G259000 Sobic004G065900 Sobic004G065900 Sobic004G086800--Sobic004G065900 Sobic002G323900 Sobic002G323900 Sobic004G086800--Sobic002G323900 Sobic001G489500 Sobic001G489500 Sobic004G086800--Sobic001G489500 Sobic010G102000 Sobic010G102000 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic001G287600 Sobic001G287600 Sobic004G086800--Sobic001G287600 Sobic009G010400--Sobic004G086800 Sobic009G010400--Sobic004G065900 Sobic001G064900 Sobic001G064900 Sobic009G010400--Sobic001G064900 Sobic009G100500 Sobic009G100500 Sobic009G010400--Sobic009G100500 Sobic006G257700 Sobic006G257700 Sobic009G010400--Sobic006G257700 Sobic009G010400--Sobic006G259000 Sobic001G095700 Sobic001G095700 Sobic009G010400--Sobic001G095700 Sobic009G010400--Sobic010G102000 Sobic004G006500 Sobic004G006500 Sobic009G010400--Sobic004G006500 Sobic003G416500--Sobic001G489500 Sobic010G023200 Sobic010G023200 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic007G077100 Sobic007G077100 Sobic003G416500--Sobic007G077100 Sobic009G217500 Sobic009G217500 Sobic003G416500--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300 Sobic006G259000--Sobic003G416500 Sobic006G259000--Sobic002G323900 Sobic006G259000--Sobic010G023200 Sobic006G259000--Sobic007G077100 Sobic006G259000--Sobic010G105300 Sobic006G259000--Sobic001G064900 Sobic006G259000--Sobic001G489500 Sobic006G259000--Sobic004G086800 Sobic006G259000--Sobic009G217500 Sobic002G207300 Sobic002G207300 Sobic004G065900--Sobic002G207300 Sobic004G065900--Sobic001G095700 Sobic002G367900 Sobic002G367900 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic002G294600 Sobic002G294600 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic007G201100 Sobic007G201100 Sobic004G065900--Sobic007G201100 Sobic007G145700 Sobic007G145700 Sobic004G065900--Sobic007G145700 Sobic004G065900--Sobic009G010400 Sobic002G323900--Sobic006G259000 Sobic002G323900--Sobic003G416500 Sobic002G323900--Sobic007G077100 Sobic002G323900--Sobic001G489500 Sobic002G323900--Sobic010G023200 Sobic002G323900--Sobic004G086800 Sobic002G269300 Sobic002G269300 Sobic002G323900--Sobic002G269300 Sobic002G323900--Sobic001G064900 Sobic002G323900--Sobic009G010400 Sobic001G489500--Sobic003G416500 Sobic001G489500--Sobic010G023200 Sobic001G489500--Sobic009G217500 Sobic001G489500--Sobic006G273800 Sobic001G489500--Sobic007G077100 Sobic001G489500--Sobic006G259000 Sobic001G489500--Sobic009G120800 Sobic003G353800 Sobic003G353800 Sobic001G489500--Sobic003G353800 Sobic001G489500--Sobic002G323900 Sobic010G102000--Sobic009G217500 Sobic010G102000--Sobic010G105300 Sobic003G341100 Sobic003G341100 Sobic010G102000--Sobic003G341100 Sobic002G232800 Sobic002G232800 Sobic010G102000--Sobic002G232800 Sobic010G102000--Sobic001G064900 Sobic010G102000--Sobic007G145700 Sobic010G102000--Sobic010G023200 Sobic010G102000--Sobic007G077100 Sobic010G102000--Sobic006G273800 Sobic002G138700--Sobic006G259000 Sobic001G084000 Sobic001G084000 Sobic002G138700--Sobic001G084000 Sobic007G090300 Sobic007G090300 Sobic002G138700--Sobic007G090300 Sobic002G138700--Sobic004G086800 Sobic002G138700--Sobic010G102000 Sobic001G195100 Sobic001G195100 Sobic002G138700--Sobic001G195100 Sobic002G138700--Sobic003G416500 Sobic002G138700--Sobic009G010400 Sobic002G138700--Sobic001G287600 Sobic001G410100 Sobic001G410100 Sobic001G287600--Sobic001G410100 Sobic001G287600--Sobic004G065900 Sobic001G287600--Sobic004G086800 Sobic001G287600--Sobic002G207300 Sobic001G370600 Sobic001G370600 Sobic001G287600--Sobic001G370600 Sobic007G011000 Sobic007G011000 Sobic001G287600--Sobic007G011000 Sobic001G287600--Sobic007G201100 Sobic001G287600--Sobic009G010400 Sobic001G287600--Sobic010G102000
Octagon: transcription factors


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