Gene annotation
Transcriptome id Sobic.004G267500.3,Sobic.004G267500.2,Sobic.004G267500.1
Synonym Sb04g030540, RD2
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
universal stress protein domain containing protein, putative, expressed
UniProt C5Y0R5 , A0A194YRV4 , A0A194YRQ7
Pfam PF00582
Panther DB PTHR31964 PTHR31964:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress


Orthologs (automatic annotation)
TAIR AT2G21620 : Adenine nucleotide alpha hydrolases-like superfamily protein
RAP-DB (Rice) LOC_Os02g47650.1 : universal stress protein domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021723
Brachypodium KQK00942 , KQK00943
Barley HORVU6Hr1G068990.1 , HORVU6Hr1G068990.2 , HORVU6Hr1G068990.3 , HORVU6Hr1G068990.4 , HORVU6Hr1G068990.5 , HORVU6Hr1G068990.6 , HORVU6Hr1G068990.8 , HORVU6Hr1G068990.9 , HORVU6Hr1G068990.10
Wheat TraesCS6B02G300300 , TraesCS6A02G272900 , TraesCS6D02G252900
Populus -


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cDNA sequences
Sobic.004G267500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G169200 EF hand family protein, putative, expressed K13448: calcium-binding protein CML
2 Sobic.005G105300 expressed protein -
3 Sobic.002G379866 - -
4 Sobic.003G146000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
5 Sobic.001G074200 LRR receptor-like protein kinase, putative, expressed -
6 Sobic.006G078400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
7 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
8 Sobic.002G222800 galactosyltransferase, putative, expressed -
9 Sobic.001G147200 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
10 Sobic.005G139700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@respiratory burst oxidase, putative, expressed K13447: respiratory burst oxidase
11 Sobic.003G363200 ZOS1-17 - C2H2 zinc finger protein, expressed -
12 Sobic.007G125900 protein kinase domain containing protein, expressed -
13 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
14 Sobic.009G127000 leucine-rich repeat family protein, putative, expressed -
15 Sobic.010G175200 low-affinity cation transporter, putative, expressed -
16 Sobic.006G263100 expressed protein -
17 Sobic.001G157200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid permease family protein, putative, expressed K03294: basic amino acid/polyamine antiporter, APA family
18 Sobic.008G115500 syntaxin, putative, expressed K08486: syntaxin 1B/2/3
19 Sobic.009G142200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@No apical meristem protein, putative, expressed -
20 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1


Gene co-expression network
sample Sobic004G267500 Sobic004G267500 Sobic007G169200 Sobic007G169200 Sobic004G267500--Sobic007G169200 Sobic005G105300 Sobic005G105300 Sobic004G267500--Sobic005G105300 Sobic002G379866 Sobic002G379866 Sobic004G267500--Sobic002G379866 Sobic003G146000 Sobic003G146000 Sobic004G267500--Sobic003G146000 Sobic001G074200 Sobic001G074200 Sobic004G267500--Sobic001G074200 Sobic006G078400 Sobic006G078400 Sobic004G267500--Sobic006G078400 Sobic003G061900 Sobic003G061900 Sobic004G267500--Sobic003G061900 Sobic002G222800 Sobic002G222800 Sobic004G267500--Sobic002G222800 Sobic001G147200 Sobic001G147200 Sobic004G267500--Sobic001G147200 Sobic002G197600 Sobic002G197600 Sobic007G169200--Sobic002G197600 Sobic002G207300 Sobic002G207300 Sobic007G169200--Sobic002G207300 Sobic002G330300 Sobic002G330300 Sobic007G169200--Sobic002G330300 Sobic002G118600 Sobic002G118600 Sobic007G169200--Sobic002G118600 Sobic007G011000 Sobic007G011000 Sobic007G169200--Sobic007G011000 Sobic001G403600 Sobic001G403600 Sobic007G169200--Sobic001G403600 Sobic003G141000 Sobic003G141000 Sobic007G169200--Sobic003G141000 Sobic001G386000 Sobic001G386000 Sobic007G169200--Sobic001G386000 Sobic001G450700 Sobic001G450700 Sobic007G169200--Sobic001G450700 Sobic005G105300--Sobic004G267500 Sobic004G158901 Sobic004G158901 Sobic005G105300--Sobic004G158901 Sobic005G105300--Sobic002G379866 Sobic005G117400 Sobic005G117400 Sobic005G105300--Sobic005G117400 Sobic002G224100 Sobic002G224100 Sobic005G105300--Sobic002G224100 Sobic007G025700 Sobic007G025700 Sobic005G105300--Sobic007G025700 Sobic005G105300--Sobic001G074200 Sobic001G157200 Sobic001G157200 Sobic005G105300--Sobic001G157200 Sobic003G189200 Sobic003G189200 Sobic005G105300--Sobic003G189200 Sobic003G146100 Sobic003G146100 Sobic002G379866--Sobic003G146100 Sobic002G379866--Sobic001G157200 Sobic002G379866--Sobic002G222800 Sobic002G379866--Sobic001G074200 Sobic002G379866--Sobic002G118600 Sobic002G379866--Sobic006G078400 Sobic002G379866--Sobic004G158901 Sobic002G379866--Sobic001G147200 Sobic002G379866--Sobic002G224100 Sobic003G424500 Sobic003G424500 Sobic003G146000--Sobic003G424500 Sobic010G238400 Sobic010G238400 Sobic003G146000--Sobic010G238400 Sobic010G247500 Sobic010G247500 Sobic003G146000--Sobic010G247500 Sobic010G105500 Sobic010G105500 Sobic003G146000--Sobic010G105500 Sobic003G348700 Sobic003G348700 Sobic003G146000--Sobic003G348700 Sobic009G068900 Sobic009G068900 Sobic003G146000--Sobic009G068900 Sobic004G176900 Sobic004G176900 Sobic003G146000--Sobic004G176900 Sobic009G212800 Sobic009G212800 Sobic003G146000--Sobic009G212800 Sobic004G300300 Sobic004G300300 Sobic003G146000--Sobic004G300300 Sobic009G127000 Sobic009G127000 Sobic001G074200--Sobic009G127000 Sobic007G125900 Sobic007G125900 Sobic001G074200--Sobic007G125900 Sobic008G115500 Sobic008G115500 Sobic001G074200--Sobic008G115500 Sobic001G074200--Sobic002G379866 Sobic001G074200--Sobic001G147200 Sobic001G074200--Sobic001G157200 Sobic001G074200--Sobic005G117400 Sobic001G074200--Sobic002G118600 Sobic010G228000 Sobic010G228000 Sobic001G074200--Sobic010G228000 Sobic009G044400 Sobic009G044400 Sobic006G078400--Sobic009G044400 Sobic003G429300 Sobic003G429300 Sobic006G078400--Sobic003G429300 Sobic003G363200 Sobic003G363200 Sobic006G078400--Sobic003G363200 Sobic001G290400 Sobic001G290400 Sobic006G078400--Sobic001G290400 Sobic006G078400--Sobic002G118600 Sobic010G175200 Sobic010G175200 Sobic006G078400--Sobic010G175200 Sobic001G341600 Sobic001G341600 Sobic006G078400--Sobic001G341600 Sobic006G078400--Sobic001G147200 Sobic006G228300 Sobic006G228300 Sobic006G078400--Sobic006G228300 Sobic003G061900--Sobic001G147200 Sobic010G246000 Sobic010G246000 Sobic003G061900--Sobic010G246000 Sobic006G263100 Sobic006G263100 Sobic003G061900--Sobic006G263100 Sobic001G085900 Sobic001G085900 Sobic003G061900--Sobic001G085900 Sobic001G330700 Sobic001G330700 Sobic003G061900--Sobic001G330700 Sobic010G204300 Sobic010G204300 Sobic003G061900--Sobic010G204300 Sobic001G158500 Sobic001G158500 Sobic003G061900--Sobic001G158500 Sobic007G059900 Sobic007G059900 Sobic003G061900--Sobic007G059900 Sobic002G395600 Sobic002G395600 Sobic003G061900--Sobic002G395600 Sobic009G155200 Sobic009G155200 Sobic002G222800--Sobic009G155200 Sobic006G192500 Sobic006G192500 Sobic002G222800--Sobic006G192500 Sobic002G222800--Sobic001G157200 Sobic002G222800--Sobic002G379866 Sobic008G059200 Sobic008G059200 Sobic002G222800--Sobic008G059200 Sobic002G222800--Sobic006G078400 Sobic010G107100 Sobic010G107100 Sobic002G222800--Sobic010G107100 Sobic001G399100 Sobic001G399100 Sobic002G222800--Sobic001G399100 Sobic002G222800--Sobic004G158901 Sobic003G019200 Sobic003G019200 Sobic001G147200--Sobic003G019200 Sobic001G147200--Sobic010G246000 Sobic001G147200--Sobic002G118600 Sobic001G147200--Sobic010G204300 Sobic001G147200--Sobic006G228300 Sobic001G147200--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic001G147200--Sobic001G538866 Sobic002G374100 Sobic002G374100 Sobic001G147200--Sobic002G374100 Sobic001G147200--Sobic006G263100
Octagon: transcription factors


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