Gene annotation
Transcriptome id Sobic.003G119800.2,Sobic.003G119800.3,Sobic.003G119800.1
Synonym Sb03g010130, NAC086, anac086
Functional annotation Expressed in older stem (PubMedID : 28649278)
no apical meristem protein, putative, expressed
UniProt A0A1B6Q2Q7 , A0A1W0VWX2 , A0A1W0VX20
Pfam PF02365
Panther DB PTHR31989 PTHR31989:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G65910 : NAC domain containing protein 28
RAP-DB (Rice) LOC_Os01g15640.1 : no apical meristem protein, putative, expressed
MaizeGDB (Corn) Zm00025a035289 , Zm00025a023986
Brachypodium -
Barley HORVU3Hr1G036380.6 , HORVU3Hr1G036380.2 , HORVU3Hr1G036380.5 , HORVU3Hr1G036380.4 , HORVU3Hr1G036380.3 , HORVU3Hr1G036380.1
Wheat TraesCS3D02G183900 , TraesCS3D02G183900 , TraesCS3A02G176500 , TraesCS3A02G176500 , TraesCS3B02G208300 , TraesCS3B02G208300
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G119800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
2 Sobic.008G189400 NBS-LRR disease resistance protein, putative, expressed -
3 Sobic.001G290200 leucine rich repeat containing protein, expressed -
4 Sobic.009G195300 DUF803 domain containing, putative, expressed -
5 Sobic.004G031600 cyclin-T1-1, putative, expressed K15188: cyclin T
6 Sobic.001G463000 syntaxin 6, N-terminal domain containing protein, expressed -
7 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -
8 Sobic.009G230700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
9 Sobic.009G167600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
10 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
11 Sobic.003G424400 Spotted leaf protein(PubMedID : 24906815)@armadillo repeat-containing protein, putative, expressed K08332: vacuolar protein 8
12 Sobic.009G137800 expressed protein -
13 Sobic.007G006900 shwachman-Bodian-Diamond syndrome protein, putative, expressed K14574: SDO1, ribosome maturation protein SDO1
14 Sobic.001G055900 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
15 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
16 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
17 Sobic.008G025900 expressed protein -
18 Sobic.009G157500 MYB family transcription factor, putative, expressed -
19 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
20 Sobic.002G215100 exo70 exocyst complex subunit, putative, expressed K07195: EXOC7, exocyst complex component 7


Gene co-expression network
sample Sobic003G119800 Sobic003G119800 Sobic009G134600 Sobic009G134600 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic001G290200 Sobic001G290200 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic004G031600 Sobic004G031600 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic009G230700 Sobic009G230700 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600 Sobic009G134600--Sobic003G119800 Sobic006G218700 Sobic006G218700 Sobic009G134600--Sobic006G218700 Sobic009G134600--Sobic009G230700 Sobic007G178200 Sobic007G178200 Sobic009G134600--Sobic007G178200 Sobic009G059700 Sobic009G059700 Sobic009G134600--Sobic009G059700 Sobic003G056500 Sobic003G056500 Sobic009G134600--Sobic003G056500 Sobic002G330300 Sobic002G330300 Sobic009G134600--Sobic002G330300 Sobic009G134600--Sobic001G290200 Sobic009G134600--Sobic004G031600 Sobic008G189400--Sobic003G119800 Sobic009G137800 Sobic009G137800 Sobic008G189400--Sobic009G137800 Sobic010G056000 Sobic010G056000 Sobic008G189400--Sobic010G056000 Sobic006G273200 Sobic006G273200 Sobic008G189400--Sobic006G273200 Sobic001G351700 Sobic001G351700 Sobic008G189400--Sobic001G351700 Sobic002G365100 Sobic002G365100 Sobic008G189400--Sobic002G365100 Sobic007G145200 Sobic007G145200 Sobic008G189400--Sobic007G145200 Sobic008G189400--Sobic009G195300 Sobic008G025900 Sobic008G025900 Sobic008G189400--Sobic008G025900 Sobic001G290200--Sobic009G137800 Sobic001G290200--Sobic003G119800 Sobic005G046100 Sobic005G046100 Sobic001G290200--Sobic005G046100 Sobic001G290200--Sobic001G351700 Sobic001G290200--Sobic008G025900 Sobic010G260500 Sobic010G260500 Sobic001G290200--Sobic010G260500 Sobic002G324200 Sobic002G324200 Sobic001G290200--Sobic002G324200 Sobic003G081100 Sobic003G081100 Sobic001G290200--Sobic003G081100 Sobic005G167300 Sobic005G167300 Sobic001G290200--Sobic005G167300 Sobic009G195300--Sobic003G119800 Sobic004G347900 Sobic004G347900 Sobic009G195300--Sobic004G347900 Sobic009G195300--Sobic008G189400 Sobic003G424400 Sobic003G424400 Sobic009G195300--Sobic003G424400 Sobic006G025300 Sobic006G025300 Sobic009G195300--Sobic006G025300 Sobic007G006900 Sobic007G006900 Sobic009G195300--Sobic007G006900 Sobic002G134600 Sobic002G134600 Sobic009G195300--Sobic002G134600 Sobic003G361500 Sobic003G361500 Sobic009G195300--Sobic003G361500 Sobic008G139700 Sobic008G139700 Sobic009G195300--Sobic008G139700 Sobic001G516100 Sobic001G516100 Sobic004G031600--Sobic001G516100 Sobic010G052800 Sobic010G052800 Sobic004G031600--Sobic010G052800 Sobic004G031600--Sobic002G330300 Sobic009G231200 Sobic009G231200 Sobic004G031600--Sobic009G231200 Sobic003G407200 Sobic003G407200 Sobic004G031600--Sobic003G407200 Sobic001G031600 Sobic001G031600 Sobic004G031600--Sobic001G031600 Sobic004G031600--Sobic003G119800 Sobic007G169200 Sobic007G169200 Sobic004G031600--Sobic007G169200 Sobic004G031600--Sobic001G463000 Sobic001G463000--Sobic003G119800 Sobic001G463000--Sobic004G031600 Sobic001G541100 Sobic001G541100 Sobic001G463000--Sobic001G541100 Sobic009G219000 Sobic009G219000 Sobic001G463000--Sobic009G219000 Sobic009G138100 Sobic009G138100 Sobic001G463000--Sobic009G138100 Sobic004G274400 Sobic004G274400 Sobic001G463000--Sobic004G274400 Sobic001G463000--Sobic003G361500 Sobic001G463000--Sobic001G516100 Sobic002G394400 Sobic002G394400 Sobic001G463000--Sobic002G394400 Sobic007G019800 Sobic007G019800 Sobic001G472600--Sobic007G019800 Sobic002G215100 Sobic002G215100 Sobic001G472600--Sobic002G215100 Sobic001G421300 Sobic001G421300 Sobic001G472600--Sobic001G421300 Sobic006G109300 Sobic006G109300 Sobic001G472600--Sobic006G109300 Sobic002G262600 Sobic002G262600 Sobic001G472600--Sobic002G262600 Sobic003G345400 Sobic003G345400 Sobic001G472600--Sobic003G345400 Sobic004G146800 Sobic004G146800 Sobic001G472600--Sobic004G146800 Sobic003G084700 Sobic003G084700 Sobic001G472600--Sobic003G084700 Sobic001G472600--Sobic003G119800 Sobic009G230700--Sobic009G134600 Sobic009G230700--Sobic003G119800 Sobic009G230700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic009G230700--Sobic003G317200 Sobic009G230700--Sobic002G330300 Sobic009G230700--Sobic004G347900 Sobic009G230700--Sobic003G056500 Sobic009G230700--Sobic005G046100 Sobic002G119800 Sobic002G119800 Sobic009G230700--Sobic002G119800 Sobic009G167600--Sobic003G119800 Sobic005G104400 Sobic005G104400 Sobic009G167600--Sobic005G104400 Sobic003G044200 Sobic003G044200 Sobic009G167600--Sobic003G044200 Sobic009G167600--Sobic006G218700 Sobic002G400200 Sobic002G400200 Sobic009G167600--Sobic002G400200 Sobic009G167600--Sobic008G025900 Sobic010G025300 Sobic010G025300 Sobic009G167600--Sobic010G025300 Sobic003G433100 Sobic003G433100 Sobic009G167600--Sobic003G433100 Sobic009G167600--Sobic009G134600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.