Gene annotation
Transcriptome id Sobic.005G046100.1
Synonym VIP1, SUE3, Sb05g003810
Functional annotation bZIP transcription factor domain containing protein, expressed
UniProt C5Y559
Pfam PF00170
Panther DB PTHR13690 PTHR13690:SF86
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G43700 : VIRE2-interacting protein 1
RAP-DB (Rice) LOC_Os12g06520.1 : bZIP transcription factor domain containing protein, expressed
MaizeGDB (Corn) Zm00025a053985 , Zm00025a034154 , Zm00025a012924 , Zm00025a022934
Brachypodium KQJ89333 , KQJ92141
Barley HORVU4Hr1G020540.1 , HORVU4Hr1G020540.3 , HORVU4Hr1G020540.2
Wheat TraesCS4D02G110900 , TraesCS4B02G113400 , TraesCS4A02G209900
Populus -


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cDNA sequences
Sobic.005G046100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G167300 BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
2 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
3 Sobic.001G420700 clathrin assembly protein, putative, expressed -
4 Sobic.006G109300 protein binding protein, putative, expressed -
5 Sobic.004G198000 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
6 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
7 Sobic.009G137800 expressed protein -
8 Sobic.001G290200 leucine rich repeat containing protein, expressed -
9 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -
10 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
11 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
12 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
13 Sobic.008G025900 expressed protein -
14 Sobic.006G134100 carbonyl reductase 3, putative, expressed -
15 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
16 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
17 Sobic.003G116700 hydrolase, alpha/beta fold family domain containing protein, expressed -
18 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
19 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.010G077600 gb protein, putative, expressed -


Gene co-expression network
sample Sobic005G046100 Sobic005G046100 Sobic005G167300 Sobic005G167300 Sobic005G046100--Sobic005G167300 Sobic004G150400 Sobic004G150400 Sobic005G046100--Sobic004G150400 Sobic001G420700 Sobic001G420700 Sobic005G046100--Sobic001G420700 Sobic006G109300 Sobic006G109300 Sobic005G046100--Sobic006G109300 Sobic004G198000 Sobic004G198000 Sobic005G046100--Sobic004G198000 Sobic010G055500 Sobic010G055500 Sobic005G046100--Sobic010G055500 Sobic009G137800 Sobic009G137800 Sobic005G046100--Sobic009G137800 Sobic001G290200 Sobic001G290200 Sobic005G046100--Sobic001G290200 Sobic003G026300 Sobic003G026300 Sobic005G046100--Sobic003G026300 Sobic001G451000 Sobic001G451000 Sobic005G167300--Sobic001G451000 Sobic002G115801 Sobic002G115801 Sobic005G167300--Sobic002G115801 Sobic005G167300--Sobic004G198000 Sobic005G167300--Sobic003G026300 Sobic002G284200 Sobic002G284200 Sobic005G167300--Sobic002G284200 SobicK016900 SobicK016900 Sobic005G167300--SobicK016900 Sobic007G150200 Sobic007G150200 Sobic005G167300--Sobic007G150200 Sobic004G188300 Sobic004G188300 Sobic005G167300--Sobic004G188300 Sobic003G117000 Sobic003G117000 Sobic005G167300--Sobic003G117000 Sobic004G119000 Sobic004G119000 Sobic004G150400--Sobic004G119000 Sobic004G150400--Sobic010G055500 Sobic007G205800 Sobic007G205800 Sobic004G150400--Sobic007G205800 Sobic002G272800 Sobic002G272800 Sobic004G150400--Sobic002G272800 Sobic010G071200 Sobic010G071200 Sobic004G150400--Sobic010G071200 Sobic001G028400 Sobic001G028400 Sobic004G150400--Sobic001G028400 Sobic006G088100 Sobic006G088100 Sobic004G150400--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic004G150400--Sobic003G093600 Sobic004G150400--Sobic006G109300 Sobic001G420700--Sobic005G046100 Sobic008G188700 Sobic008G188700 Sobic001G420700--Sobic008G188700 Sobic007G136700 Sobic007G136700 Sobic001G420700--Sobic007G136700 Sobic001G441600 Sobic001G441600 Sobic001G420700--Sobic001G441600 Sobic003G116700 Sobic003G116700 Sobic001G420700--Sobic003G116700 Sobic001G420700--Sobic004G150400 Sobic003G424400 Sobic003G424400 Sobic001G420700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic001G420700--Sobic003G317200 Sobic001G069800 Sobic001G069800 Sobic001G420700--Sobic001G069800 Sobic006G109300--Sobic010G055500 Sobic006G109300--Sobic010G071200 Sobic006G109300--Sobic004G150400 Sobic010G033400 Sobic010G033400 Sobic006G109300--Sobic010G033400 Sobic002G365100 Sobic002G365100 Sobic006G109300--Sobic002G365100 Sobic008G142700 Sobic008G142700 Sobic006G109300--Sobic008G142700 Sobic001G131800 Sobic001G131800 Sobic006G109300--Sobic001G131800 Sobic007G063200 Sobic007G063200 Sobic006G109300--Sobic007G063200 Sobic006G109300--Sobic002G272800 Sobic004G198000--Sobic005G167300 Sobic004G198000--Sobic001G451000 Sobic004G198000--SobicK016900 Sobic003G393300 Sobic003G393300 Sobic004G198000--Sobic003G393300 Sobic004G198000--Sobic002G115801 Sobic004G198000--Sobic001G028400 Sobic004G198000--Sobic003G026300 Sobic007G191100 Sobic007G191100 Sobic004G198000--Sobic007G191100 Sobic001G271801 Sobic001G271801 Sobic004G198000--Sobic001G271801 Sobic010G055500--Sobic010G071200 Sobic004G263900 Sobic004G263900 Sobic010G055500--Sobic004G263900 Sobic001G149700 Sobic001G149700 Sobic010G055500--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G055500--Sobic004G231400 Sobic001G512900 Sobic001G512900 Sobic010G055500--Sobic001G512900 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic010G055500--Sobic004G150400 Sobic004G153600 Sobic004G153600 Sobic009G137800--Sobic004G153600 Sobic008G189400 Sobic008G189400 Sobic009G137800--Sobic008G189400 Sobic004G267300 Sobic004G267300 Sobic009G137800--Sobic004G267300 Sobic003G185200 Sobic003G185200 Sobic009G137800--Sobic003G185200 Sobic008G025900 Sobic008G025900 Sobic009G137800--Sobic008G025900 Sobic001G424700 Sobic001G424700 Sobic009G137800--Sobic001G424700 Sobic009G087800 Sobic009G087800 Sobic009G137800--Sobic009G087800 Sobic001G022100 Sobic001G022100 Sobic009G137800--Sobic001G022100 Sobic010G260500 Sobic010G260500 Sobic009G137800--Sobic010G260500 Sobic001G290200--Sobic009G137800 Sobic003G119800 Sobic003G119800 Sobic001G290200--Sobic003G119800 Sobic001G290200--Sobic005G046100 Sobic001G351700 Sobic001G351700 Sobic001G290200--Sobic001G351700 Sobic001G290200--Sobic008G025900 Sobic001G290200--Sobic010G260500 Sobic002G324200 Sobic002G324200 Sobic001G290200--Sobic002G324200 Sobic003G081100 Sobic003G081100 Sobic001G290200--Sobic003G081100 Sobic001G290200--Sobic005G167300 Sobic007G008800 Sobic007G008800 Sobic003G026300--Sobic007G008800 Sobic003G026300--Sobic004G188300 Sobic004G088400 Sobic004G088400 Sobic003G026300--Sobic004G088400 Sobic003G026300--Sobic005G167300 Sobic003G026300--Sobic007G063200 Sobic003G026300--Sobic001G451000 Sobic005G139800 Sobic005G139800 Sobic003G026300--Sobic005G139800 Sobic003G026300--Sobic002G115801 Sobic005G162600 Sobic005G162600 Sobic003G026300--Sobic005G162600
Octagon: transcription factors


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