Gene annotation
Transcriptome id Sobic.009G230700.1
Synonym SbTri20, Sb09g028350
Functional annotation Trihelix Family (PubMedID : 24864043)
transcription factor like protein, putative, expressed
UniProt C5YVI3
Pfam PF13837
Panther DB PTHR31307 PTHR31307:SF2
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05550 : sequence-specific DNA binding transcription factors
RAP-DB (Rice) LOC_Os05g48690.2 : transcription factor like protein, putative, expressed
MaizeGDB (Corn) Zm00025a044545
Brachypodium KQK09151 , KQK09152 , KQK04917 , KQK04918
Barley HORVU3Hr1G061870.1
Wheat -
Populus -


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cDNA sequences
Sobic.009G230700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
2 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
3 Sobic.003G424400 Spotted leaf protein(PubMedID : 24906815)@armadillo repeat-containing protein, putative, expressed K08332: vacuolar protein 8
4 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28
5 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
6 Sobic.004G347900 protein kinase APK1A, chloroplast precursor, putative, expressed -
7 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
8 Sobic.005G046100 bZIP transcription factor domain containing protein, expressed -
9 Sobic.002G119800 arginyl-tRNA synthetase, putative, expressed -
10 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
11 Sobic.001G441600 potyvirus VPg interacting protein, putative, expressed -
12 Sobic.003G361500 zinc finger family protein, putative, expressed -
13 Sobic.004G273200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
14 Sobic.001G420700 clathrin assembly protein, putative, expressed -
15 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
16 Sobic.001G290200 leucine rich repeat containing protein, expressed -
17 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
18 Sobic.006G109300 protein binding protein, putative, expressed -
19 Sobic.004G332000 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, putative, expressed K00736: alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
20 Sobic.001G022100 expressed protein -


Gene co-expression network
sample Sobic009G230700 Sobic009G230700 Sobic009G134600 Sobic009G134600 Sobic009G230700--Sobic009G134600 Sobic003G119800 Sobic003G119800 Sobic009G230700--Sobic003G119800 Sobic003G424400 Sobic003G424400 Sobic009G230700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic009G230700--Sobic003G317200 Sobic002G330300 Sobic002G330300 Sobic009G230700--Sobic002G330300 Sobic004G347900 Sobic004G347900 Sobic009G230700--Sobic004G347900 Sobic003G056500 Sobic003G056500 Sobic009G230700--Sobic003G056500 Sobic005G046100 Sobic005G046100 Sobic009G230700--Sobic005G046100 Sobic002G119800 Sobic002G119800 Sobic009G230700--Sobic002G119800 Sobic009G134600--Sobic003G119800 Sobic006G218700 Sobic006G218700 Sobic009G134600--Sobic006G218700 Sobic009G134600--Sobic009G230700 Sobic007G178200 Sobic007G178200 Sobic009G134600--Sobic007G178200 Sobic009G059700 Sobic009G059700 Sobic009G134600--Sobic009G059700 Sobic009G134600--Sobic003G056500 Sobic009G134600--Sobic002G330300 Sobic001G290200 Sobic001G290200 Sobic009G134600--Sobic001G290200 Sobic004G031600 Sobic004G031600 Sobic009G134600--Sobic004G031600 Sobic003G119800--Sobic009G134600 Sobic008G189400 Sobic008G189400 Sobic003G119800--Sobic008G189400 Sobic003G119800--Sobic001G290200 Sobic009G195300 Sobic009G195300 Sobic003G119800--Sobic009G195300 Sobic003G119800--Sobic004G031600 Sobic001G463000 Sobic001G463000 Sobic003G119800--Sobic001G463000 Sobic001G472600 Sobic001G472600 Sobic003G119800--Sobic001G472600 Sobic003G119800--Sobic009G230700 Sobic009G167600 Sobic009G167600 Sobic003G119800--Sobic009G167600 Sobic003G424400--Sobic003G119800 Sobic003G424400--Sobic009G230700 Sobic001G420700 Sobic001G420700 Sobic003G424400--Sobic001G420700 Sobic003G424400--Sobic009G195300 Sobic003G424400--Sobic009G134600 Sobic003G424400--Sobic008G189400 Sobic007G136700 Sobic007G136700 Sobic003G424400--Sobic007G136700 Sobic006G025300 Sobic006G025300 Sobic003G424400--Sobic006G025300 Sobic003G424400--Sobic007G178200 Sobic010G055500 Sobic010G055500 Sobic003G317200--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic003G317200--Sobic010G071200 Sobic006G109300 Sobic006G109300 Sobic003G317200--Sobic006G109300 Sobic008G142700 Sobic008G142700 Sobic003G317200--Sobic008G142700 Sobic001G206000 Sobic001G206000 Sobic003G317200--Sobic001G206000 Sobic001G441600 Sobic001G441600 Sobic003G317200--Sobic001G441600 Sobic004G231400 Sobic004G231400 Sobic003G317200--Sobic004G231400 Sobic001G149700 Sobic001G149700 Sobic003G317200--Sobic001G149700 Sobic001G138300 Sobic001G138300 Sobic003G317200--Sobic001G138300 Sobic008G016900 Sobic008G016900 Sobic002G330300--Sobic008G016900 Sobic002G379400 Sobic002G379400 Sobic002G330300--Sobic002G379400 Sobic010G052800 Sobic010G052800 Sobic002G330300--Sobic010G052800 Sobic010G228000 Sobic010G228000 Sobic002G330300--Sobic010G228000 Sobic007G011000 Sobic007G011000 Sobic002G330300--Sobic007G011000 Sobic004G025000 Sobic004G025000 Sobic002G330300--Sobic004G025000 Sobic002G118600 Sobic002G118600 Sobic002G330300--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G330300--Sobic006G263100 Sobic007G188100 Sobic007G188100 Sobic002G330300--Sobic007G188100 Sobic004G347900--Sobic009G195300 Sobic004G347900--Sobic003G317200 Sobic004G347900--Sobic001G420700 Sobic002G272600 Sobic002G272600 Sobic004G347900--Sobic002G272600 Sobic004G347900--Sobic009G230700 Sobic004G347900--Sobic003G119800 Sobic004G347900--Sobic008G142700 Sobic003G361500 Sobic003G361500 Sobic004G347900--Sobic003G361500 Sobic004G347900--Sobic001G441600 Sobic009G159900 Sobic009G159900 Sobic003G056500--Sobic009G159900 Sobic003G056500--Sobic009G134600 Sobic004G273200 Sobic004G273200 Sobic003G056500--Sobic004G273200 Sobic003G056500--Sobic006G218700 Sobic002G141000 Sobic002G141000 Sobic003G056500--Sobic002G141000 Sobic003G036000 Sobic003G036000 Sobic003G056500--Sobic003G036000 Sobic003G056500--Sobic009G230700 Sobic001G342600 Sobic001G342600 Sobic003G056500--Sobic001G342600 Sobic003G424500 Sobic003G424500 Sobic003G056500--Sobic003G424500 Sobic005G167300 Sobic005G167300 Sobic005G046100--Sobic005G167300 Sobic004G150400 Sobic004G150400 Sobic005G046100--Sobic004G150400 Sobic005G046100--Sobic001G420700 Sobic005G046100--Sobic006G109300 Sobic004G198000 Sobic004G198000 Sobic005G046100--Sobic004G198000 Sobic005G046100--Sobic010G055500 Sobic009G137800 Sobic009G137800 Sobic005G046100--Sobic009G137800 Sobic005G046100--Sobic001G290200 Sobic003G026300 Sobic003G026300 Sobic005G046100--Sobic003G026300 Sobic004G332000 Sobic004G332000 Sobic002G119800--Sobic004G332000 Sobic002G119800--Sobic009G059700 Sobic006G213601 Sobic006G213601 Sobic002G119800--Sobic006G213601 Sobic002G119800--Sobic008G016900 Sobic001G162100 Sobic001G162100 Sobic002G119800--Sobic001G162100 Sobic002G119800--Sobic009G230700 Sobic002G119800--Sobic009G134600 Sobic002G119800--Sobic007G011000 Sobic004G145200 Sobic004G145200 Sobic002G119800--Sobic004G145200
Octagon: transcription factors


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