Gene annotation
Transcriptome id Sobic.003G056500.2,Sobic.003G056500.1
Synonym CAN, Sb03g004830
Functional annotation staphylococcal nuclease homologue, putative, expressed
UniProt C5XNJ3
Pfam PF00565
Panther DB PTHR12302
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G56170 : Ca-2+ dependent nuclease
RAP-DB (Rice) LOC_Os01g07200.1 : staphylococcal nuclease homologue, putative, expressed
MaizeGDB (Corn) Zm00025a023328
Brachypodium KQK02847
Barley HORVU3Hr1G017630.8 , HORVU3Hr1G017630.9 , HORVU3Hr1G017630.2 , HORVU3Hr1G017630.3 , HORVU3Hr1G017630.1 , HORVU3Hr1G017630.6 , HORVU3Hr1G017630.7 , HORVU3Hr1G017630.10
Wheat TraesCS3B02G113500 , TraesCS3B02G113500 , TraesCS3A02G097800 , TraesCS3D02G098400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G159900 homeodomain protein, putative, expressed -
2 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1
3 Sobic.004G273200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
4 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
5 Sobic.002G141000 CAX-interacting protein 4, putative, expressed -
6 Sobic.003G036000 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
7 Sobic.009G230700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
8 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
9 Sobic.003G424500 Putative uncharacterized protein(PubMedID : 24906815)@expressed protein -
10 Sobic.002G292600 phytoene synthase(PubMedID : 22672222)@carotenoid biosynthesi(PubMedID : 18162592)@PSY3 expression influences root carotenogenesis and defines a potential bottleneck upstream of NCED(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed K02291: 15-cis-phytoene synthase
11 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -
12 Sobic.002G270700 OsRhmbd16 - Putative Rhomboid homologue, expressed -
13 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
14 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
15 Sobic.003G119800 Expressed in older stem(PubMedID : 28649278)@no apical meristem protein, putative, expressed -
16 Sobic.003G189700 thioredoxin, putative, expressed -
17 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
18 Sobic.003G376700 glycosyl transferase, putative, expressed -
19 Sobic.009G059700 thioredoxin, putative, expressed K03671: thioredoxin 1
20 Sobic.004G300300 Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed -


Gene co-expression network
sample Sobic003G056500 Sobic003G056500 Sobic009G159900 Sobic009G159900 Sobic003G056500--Sobic009G159900 Sobic009G134600 Sobic009G134600 Sobic003G056500--Sobic009G134600 Sobic004G273200 Sobic004G273200 Sobic003G056500--Sobic004G273200 Sobic006G218700 Sobic006G218700 Sobic003G056500--Sobic006G218700 Sobic002G141000 Sobic002G141000 Sobic003G056500--Sobic002G141000 Sobic003G036000 Sobic003G036000 Sobic003G056500--Sobic003G036000 Sobic009G230700 Sobic009G230700 Sobic003G056500--Sobic009G230700 Sobic001G342600 Sobic001G342600 Sobic003G056500--Sobic001G342600 Sobic003G424500 Sobic003G424500 Sobic003G056500--Sobic003G424500 Sobic006G032200 Sobic006G032200 Sobic009G159900--Sobic006G032200 Sobic003G144200 Sobic003G144200 Sobic009G159900--Sobic003G144200 Sobic009G170100 Sobic009G170100 Sobic009G159900--Sobic009G170100 Sobic001G075800 Sobic001G075800 Sobic009G159900--Sobic001G075800 Sobic001G157400 Sobic001G157400 Sobic009G159900--Sobic001G157400 Sobic003G342600 Sobic003G342600 Sobic009G159900--Sobic003G342600 Sobic003G361300 Sobic003G361300 Sobic009G159900--Sobic003G361300 Sobic009G159900--Sobic004G273200 Sobic002G023900 Sobic002G023900 Sobic009G159900--Sobic002G023900 Sobic003G119800 Sobic003G119800 Sobic009G134600--Sobic003G119800 Sobic009G134600--Sobic006G218700 Sobic009G134600--Sobic009G230700 Sobic007G178200 Sobic007G178200 Sobic009G134600--Sobic007G178200 Sobic009G059700 Sobic009G059700 Sobic009G134600--Sobic009G059700 Sobic009G134600--Sobic003G056500 Sobic002G330300 Sobic002G330300 Sobic009G134600--Sobic002G330300 Sobic001G290200 Sobic001G290200 Sobic009G134600--Sobic001G290200 Sobic004G031600 Sobic004G031600 Sobic009G134600--Sobic004G031600 Sobic002G197600 Sobic002G197600 Sobic004G273200--Sobic002G197600 Sobic002G270700 Sobic002G270700 Sobic004G273200--Sobic002G270700 Sobic004G273200--Sobic009G159900 Sobic001G081600 Sobic001G081600 Sobic004G273200--Sobic001G081600 Sobic004G281200 Sobic004G281200 Sobic004G273200--Sobic004G281200 Sobic004G025000 Sobic004G025000 Sobic004G273200--Sobic004G025000 Sobic002G344700 Sobic002G344700 Sobic004G273200--Sobic002G344700 Sobic001G476400 Sobic001G476400 Sobic004G273200--Sobic001G476400 Sobic003G338900 Sobic003G338900 Sobic004G273200--Sobic003G338900 Sobic006G218700--Sobic009G134600 Sobic003G396000 Sobic003G396000 Sobic006G218700--Sobic003G396000 Sobic003G044200 Sobic003G044200 Sobic006G218700--Sobic003G044200 Sobic006G218700--Sobic003G119800 Sobic003G379700 Sobic003G379700 Sobic006G218700--Sobic003G379700 Sobic001G076000 Sobic001G076000 Sobic006G218700--Sobic001G076000 Sobic009G167600 Sobic009G167600 Sobic006G218700--Sobic009G167600 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700 Sobic002G141000--Sobic003G056500 Sobic002G348000 Sobic002G348000 Sobic002G141000--Sobic002G348000 Sobic001G503400 Sobic001G503400 Sobic002G141000--Sobic001G503400 Sobic010G066300 Sobic010G066300 Sobic002G141000--Sobic010G066300 Sobic002G141000--Sobic009G230700 Sobic005G037900 Sobic005G037900 Sobic002G141000--Sobic005G037900 Sobic001G417800 Sobic001G417800 Sobic002G141000--Sobic001G417800 Sobic007G136700 Sobic007G136700 Sobic002G141000--Sobic007G136700 Sobic007G011000 Sobic007G011000 Sobic002G141000--Sobic007G011000 Sobic003G036000--Sobic009G159900 Sobic006G208800 Sobic006G208800 Sobic003G036000--Sobic006G208800 Sobic006G263100 Sobic006G263100 Sobic003G036000--Sobic006G263100 Sobic007G101800 Sobic007G101800 Sobic003G036000--Sobic007G101800 Sobic002G026300 Sobic002G026300 Sobic003G036000--Sobic002G026300 Sobic003G036000--Sobic007G011000 Sobic003G036000--Sobic003G056500 Sobic010G200700 Sobic010G200700 Sobic003G036000--Sobic010G200700 Sobic010G052800 Sobic010G052800 Sobic003G036000--Sobic010G052800 Sobic009G230700--Sobic009G134600 Sobic009G230700--Sobic003G119800 Sobic003G424400 Sobic003G424400 Sobic009G230700--Sobic003G424400 Sobic003G317200 Sobic003G317200 Sobic009G230700--Sobic003G317200 Sobic009G230700--Sobic002G330300 Sobic004G347900 Sobic004G347900 Sobic009G230700--Sobic004G347900 Sobic009G230700--Sobic003G056500 Sobic005G046100 Sobic005G046100 Sobic009G230700--Sobic005G046100 Sobic002G119800 Sobic002G119800 Sobic009G230700--Sobic002G119800 Sobic006G025300 Sobic006G025300 Sobic001G342600--Sobic006G025300 Sobic001G342600--Sobic007G178200 Sobic006G191100 Sobic006G191100 Sobic001G342600--Sobic006G191100 Sobic001G342600--Sobic003G056500 Sobic003G278700 Sobic003G278700 Sobic001G342600--Sobic003G278700 Sobic005G094200 Sobic005G094200 Sobic001G342600--Sobic005G094200 Sobic006G267700 Sobic006G267700 Sobic001G342600--Sobic006G267700 Sobic002G359000 Sobic002G359000 Sobic001G342600--Sobic002G359000 Sobic002G306000 Sobic002G306000 Sobic001G342600--Sobic002G306000 Sobic003G146000 Sobic003G146000 Sobic003G424500--Sobic003G146000 Sobic004G300300 Sobic004G300300 Sobic003G424500--Sobic004G300300 Sobic010G247500 Sobic010G247500 Sobic003G424500--Sobic010G247500 Sobic010G105500 Sobic010G105500 Sobic003G424500--Sobic010G105500 Sobic009G167000 Sobic009G167000 Sobic003G424500--Sobic009G167000 Sobic009G030600 Sobic009G030600 Sobic003G424500--Sobic009G030600 Sobic003G087100 Sobic003G087100 Sobic003G424500--Sobic003G087100 Sobic008G059000 Sobic008G059000 Sobic003G424500--Sobic008G059000 Sobic009G076500 Sobic009G076500 Sobic003G424500--Sobic009G076500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.