Gene annotation
Transcriptome id Sobic.002G292600.1
Synonym SbPSY3;Phytoene synthase, Sb02g032370, PSY3;phytoene synthase 3, SbPSY3, PSY
Functional annotation phytoene synthase (PubMedID : 22672222)
carotenoid biosynthesi (PubMedID : 18162592)
PSY3 expression influences root carotenogenesis and defines a potential bottleneck upstream of NCED (PubMedID : 18162592)
phytoene synthase, chloroplast precursor, putative, expressed
UniProt A9UKC3
Pfam PF00494
Panther DB PTHR31480 PTHR31480:SF6
NCBI CDD KOG4411; Phytoene/squalene synthetase
KEGG Orthology K02291; 15-cis-phytoene synthase
Gene Ontology GO:0016740; transferase activity GO:0009058biosynthetic process


Orthologs (automatic annotation)
TAIR AT5G17230 : PHYTOENE SYNTHASE
RAP-DB (Rice) LOC_Os09g38320.1 : phytoene synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a014536 , Zm00025a047938
Brachypodium KQJ91408
Barley HORVU5Hr1G088130.10 , HORVU5Hr1G088130.9 , HORVU5Hr1G088130.8 , HORVU5Hr1G088130.7 , HORVU5Hr1G088130.6 , HORVU5Hr1G088130.5 , HORVU5Hr1G088130.4 , HORVU5Hr1G088130.3 , HORVU5Hr1G088130.2
Wheat TraesCS7B02G482000 , TraesCS5A02G356300 , TraesCS5A02G356300 , TraesCS5D02G365100 , TraesCS5D02G026000 , TraesCS5B02G358800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
2 Sobic.003G356700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.003G424500 Putative uncharacterized protein(PubMedID : 24906815)@expressed protein -
4 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
5 Sobic.006G218700 tyrosine protein kinase domain containing protein, putative, expressed -
6 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
7 Sobic.002G119800 arginyl-tRNA synthetase, putative, expressed -
8 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
9 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
10 Sobic.010G041700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
11 Sobic.002G020900 GCRP5 - Glycine and cysteine rich family protein precursor, expressed -
12 Sobic.004G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09843: (+)-abscisic acid 8'-hydroxylase
13 Sobic.006G267700 fiber protein Fb34, putative, expressed -
14 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
15 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
16 Sobic.002G026300 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
17 Sobic.003G272800 jacalin-like lectin domain containing protein, expressed -
18 Sobic.004G300300 Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed -
19 Sobic.005G195600 adenylyl-sulfate kinase, putative, expressed K00860: adenylylsulfate kinase
20 Sobic.009G134600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed K14493: gibberellin receptor GID1


Gene co-expression network
sample Sobic002G292600 Sobic002G292600 Sobic004G145200 Sobic004G145200 Sobic002G292600--Sobic004G145200 Sobic003G356700 Sobic003G356700 Sobic002G292600--Sobic003G356700 Sobic003G424500 Sobic003G424500 Sobic002G292600--Sobic003G424500 Sobic003G056500 Sobic003G056500 Sobic002G292600--Sobic003G056500 Sobic006G218700 Sobic006G218700 Sobic002G292600--Sobic006G218700 Sobic001G403600 Sobic001G403600 Sobic002G292600--Sobic001G403600 Sobic002G119800 Sobic002G119800 Sobic002G292600--Sobic002G119800 Sobic007G011000 Sobic007G011000 Sobic002G292600--Sobic007G011000 Sobic001G342600 Sobic001G342600 Sobic002G292600--Sobic001G342600 Sobic010G228000 Sobic010G228000 Sobic004G145200--Sobic010G228000 Sobic008G016900 Sobic008G016900 Sobic004G145200--Sobic008G016900 Sobic007G188100 Sobic007G188100 Sobic004G145200--Sobic007G188100 Sobic006G076201 Sobic006G076201 Sobic004G145200--Sobic006G076201 Sobic010G062800 Sobic010G062800 Sobic004G145200--Sobic010G062800 Sobic002G362900 Sobic002G362900 Sobic004G145200--Sobic002G362900 Sobic001G012800 Sobic001G012800 Sobic004G145200--Sobic001G012800 Sobic002G242500 Sobic002G242500 Sobic004G145200--Sobic002G242500 Sobic002G118600 Sobic002G118600 Sobic004G145200--Sobic002G118600 Sobic003G396000 Sobic003G396000 Sobic003G356700--Sobic003G396000 Sobic003G356700--Sobic007G011000 Sobic003G035700 Sobic003G035700 Sobic003G356700--Sobic003G035700 Sobic003G356700--Sobic002G292600 Sobic004G280800 Sobic004G280800 Sobic003G356700--Sobic004G280800 Sobic004G325700 Sobic004G325700 Sobic003G356700--Sobic004G325700 Sobic004G042600 Sobic004G042600 Sobic003G356700--Sobic004G042600 Sobic003G356700--Sobic006G218700 Sobic001G094400 Sobic001G094400 Sobic003G356700--Sobic001G094400 Sobic003G146000 Sobic003G146000 Sobic003G424500--Sobic003G146000 Sobic004G300300 Sobic004G300300 Sobic003G424500--Sobic004G300300 Sobic010G247500 Sobic010G247500 Sobic003G424500--Sobic010G247500 Sobic010G105500 Sobic010G105500 Sobic003G424500--Sobic010G105500 Sobic009G167000 Sobic009G167000 Sobic003G424500--Sobic009G167000 Sobic009G030600 Sobic009G030600 Sobic003G424500--Sobic009G030600 Sobic003G087100 Sobic003G087100 Sobic003G424500--Sobic003G087100 Sobic008G059000 Sobic008G059000 Sobic003G424500--Sobic008G059000 Sobic009G076500 Sobic009G076500 Sobic003G424500--Sobic009G076500 Sobic009G159900 Sobic009G159900 Sobic003G056500--Sobic009G159900 Sobic009G134600 Sobic009G134600 Sobic003G056500--Sobic009G134600 Sobic004G273200 Sobic004G273200 Sobic003G056500--Sobic004G273200 Sobic003G056500--Sobic006G218700 Sobic002G141000 Sobic002G141000 Sobic003G056500--Sobic002G141000 Sobic003G036000 Sobic003G036000 Sobic003G056500--Sobic003G036000 Sobic009G230700 Sobic009G230700 Sobic003G056500--Sobic009G230700 Sobic003G056500--Sobic001G342600 Sobic003G056500--Sobic003G424500 Sobic006G218700--Sobic009G134600 Sobic006G218700--Sobic003G396000 Sobic003G044200 Sobic003G044200 Sobic006G218700--Sobic003G044200 Sobic003G119800 Sobic003G119800 Sobic006G218700--Sobic003G119800 Sobic003G379700 Sobic003G379700 Sobic006G218700--Sobic003G379700 Sobic001G076000 Sobic001G076000 Sobic006G218700--Sobic001G076000 Sobic009G167600 Sobic009G167600 Sobic006G218700--Sobic009G167600 Sobic006G218700--Sobic003G056500 Sobic003G376700 Sobic003G376700 Sobic006G218700--Sobic003G376700 Sobic001G403600--Sobic002G118600 Sobic001G290400 Sobic001G290400 Sobic001G403600--Sobic001G290400 Sobic001G081600 Sobic001G081600 Sobic001G403600--Sobic001G081600 Sobic001G403600--Sobic010G228000 Sobic001G403600--Sobic004G280800 Sobic001G189700 Sobic001G189700 Sobic001G403600--Sobic001G189700 Sobic001G403600--Sobic007G011000 Sobic005G139700 Sobic005G139700 Sobic001G403600--Sobic005G139700 Sobic001G482700 Sobic001G482700 Sobic001G403600--Sobic001G482700 Sobic004G332000 Sobic004G332000 Sobic002G119800--Sobic004G332000 Sobic009G059700 Sobic009G059700 Sobic002G119800--Sobic009G059700 Sobic006G213601 Sobic006G213601 Sobic002G119800--Sobic006G213601 Sobic002G119800--Sobic008G016900 Sobic001G162100 Sobic001G162100 Sobic002G119800--Sobic001G162100 Sobic002G119800--Sobic009G230700 Sobic002G119800--Sobic009G134600 Sobic002G119800--Sobic007G011000 Sobic002G119800--Sobic004G145200 Sobic007G011000--Sobic002G118600 Sobic002G330300 Sobic002G330300 Sobic007G011000--Sobic002G330300 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic004G025000 Sobic004G025000 Sobic007G011000--Sobic004G025000 Sobic006G025300 Sobic006G025300 Sobic001G342600--Sobic006G025300 Sobic007G178200 Sobic007G178200 Sobic001G342600--Sobic007G178200 Sobic006G191100 Sobic006G191100 Sobic001G342600--Sobic006G191100 Sobic001G342600--Sobic003G056500 Sobic003G278700 Sobic003G278700 Sobic001G342600--Sobic003G278700 Sobic005G094200 Sobic005G094200 Sobic001G342600--Sobic005G094200 Sobic006G267700 Sobic006G267700 Sobic001G342600--Sobic006G267700 Sobic002G359000 Sobic002G359000 Sobic001G342600--Sobic002G359000 Sobic002G306000 Sobic002G306000 Sobic001G342600--Sobic002G306000
Octagon: transcription factors


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