Gene annotation
Transcriptome id Sobic.006G267700.1
Synonym Sb06g032990
Functional annotation fiber protein Fb34, putative, expressed
UniProt C5YAJ4
Pfam PF06749
Panther DB PTHR31769 PTHR31769:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G27435 : Protein of unknown function (DUF1218)
RAP-DB (Rice) LOC_Os04g58160.1 : fiber protein Fb34, putative, expressed
MaizeGDB (Corn) Zm00025a057386 , Zm00025a009287
Brachypodium KQJ85302
Barley -
Wheat TraesCS2A02G591700 , TraesCS2D02G562500 , TraesCS2B02G592000
Populus -


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cDNA sequences
Sobic.006G267700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G270700 OsRhmbd16 - Putative Rhomboid homologue, expressed -
2 Sobic.010G050900 harpin-induced protein, putative, expressed -
3 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
4 Sobic.004G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed K09843: (+)-abscisic acid 8'-hydroxylase
5 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
6 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
7 Sobic.007G011000 synaptobrevin-related family protein, putative, expressed -
8 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
9 Sobic.004G025000 CAMK_CAMK_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
10 Sobic.007G178200 ER lumen protein retaining receptor, putative, expressed -
11 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
12 Sobic.003G338900 expressed protein -
13 Sobic.001G342600 PDI, putative, expressed K17609: nucleoredoxin
14 Sobic.004G273200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
15 Sobic.001G436000 expressed protein -
16 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
17 Sobic.004G145200 membrane attack complex component/perforin/complement C9, putative, expressed -
18 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
19 Sobic.004G280800 Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed K11805: DCAF7, DDB1- and CUL4-associated factor 7
20 Sobic.002G330300 chitin-inducible gibberellin-responsive protein, putative, expressed -


Gene co-expression network
sample Sobic006G267700 Sobic006G267700 Sobic002G270700 Sobic002G270700 Sobic006G267700--Sobic002G270700 Sobic010G050900 Sobic010G050900 Sobic006G267700--Sobic010G050900 Sobic001G217000 Sobic001G217000 Sobic006G267700--Sobic001G217000 Sobic004G268700 Sobic004G268700 Sobic006G267700--Sobic004G268700 Sobic002G379400 Sobic002G379400 Sobic006G267700--Sobic002G379400 Sobic003G392200 Sobic003G392200 Sobic006G267700--Sobic003G392200 Sobic007G011000 Sobic007G011000 Sobic006G267700--Sobic007G011000 Sobic002G210300 Sobic002G210300 Sobic006G267700--Sobic002G210300 Sobic004G025000 Sobic004G025000 Sobic006G267700--Sobic004G025000 Sobic004G273200 Sobic004G273200 Sobic002G270700--Sobic004G273200 Sobic002G270700--Sobic003G392200 Sobic001G525400 Sobic001G525400 Sobic002G270700--Sobic001G525400 Sobic003G338900 Sobic003G338900 Sobic002G270700--Sobic003G338900 Sobic002G270700--Sobic006G267700 Sobic002G330300 Sobic002G330300 Sobic002G270700--Sobic002G330300 Sobic007G178200 Sobic007G178200 Sobic002G270700--Sobic007G178200 Sobic006G263100 Sobic006G263100 Sobic002G270700--Sobic006G263100 Sobic002G197600 Sobic002G197600 Sobic002G270700--Sobic002G197600 Sobic010G050900--Sobic006G267700 Sobic001G099100 Sobic001G099100 Sobic010G050900--Sobic001G099100 Sobic010G050900--Sobic002G270700 Sobic003G353400 Sobic003G353400 Sobic010G050900--Sobic003G353400 Sobic002G118700 Sobic002G118700 Sobic010G050900--Sobic002G118700 Sobic004G272200 Sobic004G272200 Sobic010G050900--Sobic004G272200 Sobic004G051300 Sobic004G051300 Sobic010G050900--Sobic004G051300 Sobic009G195900 Sobic009G195900 Sobic010G050900--Sobic009G195900 Sobic002G124700 Sobic002G124700 Sobic010G050900--Sobic002G124700 Sobic001G473900 Sobic001G473900 Sobic001G217000--Sobic001G473900 Sobic001G113700 Sobic001G113700 Sobic001G217000--Sobic001G113700 Sobic001G217000--Sobic002G379400 Sobic010G076600 Sobic010G076600 Sobic001G217000--Sobic010G076600 Sobic001G217000--Sobic003G338900 Sobic001G217000--Sobic002G210300 Sobic009G208800 Sobic009G208800 Sobic001G217000--Sobic009G208800 Sobic004G257300 Sobic004G257300 Sobic001G217000--Sobic004G257300 Sobic009G220200 Sobic009G220200 Sobic001G217000--Sobic009G220200 Sobic002G188700 Sobic002G188700 Sobic004G268700--Sobic002G188700 Sobic009G167000 Sobic009G167000 Sobic004G268700--Sobic009G167000 Sobic001G482700 Sobic001G482700 Sobic004G268700--Sobic001G482700 Sobic002G021300 Sobic002G021300 Sobic004G268700--Sobic002G021300 Sobic008G036000 Sobic008G036000 Sobic004G268700--Sobic008G036000 Sobic004G300300 Sobic004G300300 Sobic004G268700--Sobic004G300300 Sobic009G030600 Sobic009G030600 Sobic004G268700--Sobic009G030600 Sobic003G424500 Sobic003G424500 Sobic004G268700--Sobic003G424500 Sobic010G200700 Sobic010G200700 Sobic004G268700--Sobic010G200700 Sobic002G379400--Sobic004G025000 Sobic002G379400--Sobic002G330300 Sobic002G379400--Sobic003G338900 Sobic008G016900 Sobic008G016900 Sobic002G379400--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G379400--Sobic010G228000 Sobic002G118600 Sobic002G118600 Sobic002G379400--Sobic002G118600 Sobic002G379400--Sobic006G263100 Sobic001G436000 Sobic001G436000 Sobic002G379400--Sobic001G436000 Sobic002G294700 Sobic002G294700 Sobic002G379400--Sobic002G294700 Sobic003G392200--Sobic007G178200 Sobic007G188100 Sobic007G188100 Sobic003G392200--Sobic007G188100 Sobic003G392200--Sobic001G525400 Sobic003G392200--Sobic002G270700 Sobic003G392200--Sobic002G197600 Sobic009G171100 Sobic009G171100 Sobic003G392200--Sobic009G171100 Sobic001G081600 Sobic001G081600 Sobic003G392200--Sobic001G081600 Sobic002G395600 Sobic002G395600 Sobic003G392200--Sobic002G395600 Sobic001G063600 Sobic001G063600 Sobic003G392200--Sobic001G063600 Sobic007G011000--Sobic002G118600 Sobic007G011000--Sobic002G330300 Sobic007G011000--Sobic010G228000 Sobic007G212200 Sobic007G212200 Sobic007G011000--Sobic007G212200 Sobic004G280800 Sobic004G280800 Sobic007G011000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic007G011000--Sobic003G425200 Sobic002G354900 Sobic002G354900 Sobic007G011000--Sobic002G354900 Sobic010G041700 Sobic010G041700 Sobic007G011000--Sobic010G041700 Sobic007G011000--Sobic004G025000 Sobic009G027900 Sobic009G027900 Sobic002G210300--Sobic009G027900 Sobic002G210300--Sobic003G338900 Sobic002G210300--Sobic001G217000 Sobic003G012800 Sobic003G012800 Sobic002G210300--Sobic003G012800 Sobic002G210300--Sobic009G220200 Sobic001G051800 Sobic001G051800 Sobic002G210300--Sobic001G051800 Sobic003G339100 Sobic003G339100 Sobic002G210300--Sobic003G339100 Sobic002G272900 Sobic002G272900 Sobic002G210300--Sobic002G272900 Sobic002G210300--Sobic001G113700 Sobic004G025000--Sobic001G081600 Sobic004G025000--Sobic002G379400 Sobic006G095600 Sobic006G095600 Sobic004G025000--Sobic006G095600 Sobic002G344700 Sobic002G344700 Sobic004G025000--Sobic002G344700 Sobic004G025000--Sobic002G330300 Sobic001G476400 Sobic001G476400 Sobic004G025000--Sobic001G476400 Sobic004G025000--Sobic001G063600 Sobic001G314700 Sobic001G314700 Sobic004G025000--Sobic001G314700 Sobic010G076700 Sobic010G076700 Sobic004G025000--Sobic010G076700
Octagon: transcription factors


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