Gene annotation
Transcriptome id Sobic.003G424500.1
Synonym Sb03g045710
Functional annotation Putative uncharacterized protein (PubMedID : 24906815)
expressed protein
UniProt C5XHU4
Pfam PF12734
Panther DB PTHR31568
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G04080 : -
RAP-DB (Rice) LOC_Os01g72009.1 : expressed protein
MaizeGDB (Corn) Zm00025a039146
Brachypodium KQK11535
Barley HORVU3Hr1G106810.6 , HORVU3Hr1G106810.5 , HORVU3Hr1G106810.4 , HORVU3Hr1G106810.2 , HORVU3Hr1G106900.1 , HORVU3Hr1G106900.3 , HORVU3Hr1G106900.2 , HORVU3Hr1G106850.1
Wheat TraesCS3D02G483700 , TraesCS3B02G537700 , TraesCS3B02G537600 , TraesCS3A02G489100 , TraesCS3D02G484000
Populus -


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cDNA sequences
Sobic.003G424500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G146000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@methyltransferase, putative, expressed -
2 Sobic.004G300300 Up-reguralion under drought(PubMedID : 24916767)@homeobox associated leucine zipper, putative, expressed -
3 Sobic.010G247500 homeobox associated leucine zipper, putative, expressed -
4 Sobic.010G105500 - -
5 Sobic.009G167000 expressed protein -
6 Sobic.009G030600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed -
7 Sobic.003G087100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.008G059000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
9 Sobic.009G076500 expressed protein -
10 Sobic.002G021300 bZIP transcription factor domain containing protein, expressed -
11 Sobic.010G238400 cis-zeatin O-glucosyltransferase, putative, expressed K13495: cis-zeatin O-glucosyltransferase
12 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
13 Sobic.006G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
14 Sobic.004G176900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.9 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
15 Sobic.006G026400 - -
16 Sobic.004G244100 glycosyl transferase 8 domain containing protein, putative, expressed -
17 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
18 Sobic.003G422200 recA protein, expressed -
19 Sobic.002G135800 chlorophyllase-2, chloroplast precursor, putative, expressed K08099: chlorophyllase
20 Sobic.004G244300 formin-like protein 3 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G424500 Sobic003G424500 Sobic003G146000 Sobic003G146000 Sobic003G424500--Sobic003G146000 Sobic004G300300 Sobic004G300300 Sobic003G424500--Sobic004G300300 Sobic010G247500 Sobic010G247500 Sobic003G424500--Sobic010G247500 Sobic010G105500 Sobic010G105500 Sobic003G424500--Sobic010G105500 Sobic009G167000 Sobic009G167000 Sobic003G424500--Sobic009G167000 Sobic009G030600 Sobic009G030600 Sobic003G424500--Sobic009G030600 Sobic003G087100 Sobic003G087100 Sobic003G424500--Sobic003G087100 Sobic008G059000 Sobic008G059000 Sobic003G424500--Sobic008G059000 Sobic009G076500 Sobic009G076500 Sobic003G424500--Sobic009G076500 Sobic003G146000--Sobic003G424500 Sobic010G238400 Sobic010G238400 Sobic003G146000--Sobic010G238400 Sobic003G146000--Sobic010G247500 Sobic003G146000--Sobic010G105500 Sobic003G348700 Sobic003G348700 Sobic003G146000--Sobic003G348700 Sobic009G068900 Sobic009G068900 Sobic003G146000--Sobic009G068900 Sobic004G176900 Sobic004G176900 Sobic003G146000--Sobic004G176900 Sobic009G212800 Sobic009G212800 Sobic003G146000--Sobic009G212800 Sobic003G146000--Sobic004G300300 Sobic002G021300 Sobic002G021300 Sobic004G300300--Sobic002G021300 Sobic004G300300--Sobic003G424500 Sobic004G300300--Sobic009G167000 Sobic002G135800 Sobic002G135800 Sobic004G300300--Sobic002G135800 Sobic002G188700 Sobic002G188700 Sobic004G300300--Sobic002G188700 Sobic007G101800 Sobic007G101800 Sobic004G300300--Sobic007G101800 Sobic004G300300--Sobic003G087100 Sobic004G300300--Sobic008G059000 Sobic004G300300--Sobic009G076500 Sobic010G247500--Sobic010G105500 Sobic010G247500--Sobic010G238400 Sobic006G203000 Sobic006G203000 Sobic010G247500--Sobic006G203000 Sobic010G247500--Sobic003G424500 Sobic010G247500--Sobic003G146000 Sobic002G037400 Sobic002G037400 Sobic010G247500--Sobic002G037400 Sobic006G026400 Sobic006G026400 Sobic010G247500--Sobic006G026400 Sobic004G281200 Sobic004G281200 Sobic010G247500--Sobic004G281200 Sobic010G247500--Sobic003G087100 Sobic010G105500--Sobic010G247500 Sobic010G105500--Sobic003G424500 Sobic010G105500--Sobic009G076500 Sobic010G105500--Sobic010G238400 Sobic010G105500--Sobic009G167000 Sobic010G105500--Sobic002G021300 Sobic010G105500--Sobic003G146000 Sobic010G105500--Sobic006G203000 Sobic010G201200 Sobic010G201200 Sobic010G105500--Sobic010G201200 Sobic009G167000--Sobic002G021300 Sobic004G244300 Sobic004G244300 Sobic009G167000--Sobic004G244300 Sobic006G194600 Sobic006G194600 Sobic009G167000--Sobic006G194600 Sobic004G244100 Sobic004G244100 Sobic009G167000--Sobic004G244100 Sobic009G167000--Sobic004G281200 Sobic002G217100 Sobic002G217100 Sobic009G167000--Sobic002G217100 Sobic009G167000--Sobic009G076500 Sobic008G058900 Sobic008G058900 Sobic009G167000--Sobic008G058900 Sobic009G167000--Sobic008G059000 Sobic009G030600--Sobic003G424500 Sobic009G030600--Sobic008G059000 Sobic009G030600--Sobic009G167000 Sobic009G030600--Sobic004G281200 Sobic009G030600--Sobic002G217100 Sobic001G050800 Sobic001G050800 Sobic009G030600--Sobic001G050800 Sobic004G053200 Sobic004G053200 Sobic009G030600--Sobic004G053200 Sobic001G051800 Sobic001G051800 Sobic009G030600--Sobic001G051800 Sobic009G030600--Sobic006G194600 Sobic003G087100--Sobic004G281200 Sobic003G087100--Sobic002G037400 Sobic003G087100--Sobic006G203000 Sobic003G087100--Sobic008G059000 Sobic002G110200 Sobic002G110200 Sobic003G087100--Sobic002G110200 Sobic004G309600 Sobic004G309600 Sobic003G087100--Sobic004G309600 Sobic003G087100--Sobic003G424500 Sobic001G081600 Sobic001G081600 Sobic003G087100--Sobic001G081600 Sobic001G075101 Sobic001G075101 Sobic003G087100--Sobic001G075101 Sobic008G059000--Sobic004G281200 Sobic008G059000--Sobic008G058900 Sobic008G059000--Sobic002G021300 Sobic008G059000--Sobic003G087100 Sobic008G059000--Sobic006G194600 Sobic008G059000--Sobic009G167000 Sobic008G059000--Sobic004G244100 Sobic008G059000--Sobic009G076500 Sobic010G016500 Sobic010G016500 Sobic008G059000--Sobic010G016500 Sobic009G076500--Sobic002G021300 Sobic009G076700 Sobic009G076700 Sobic009G076500--Sobic009G076700 Sobic009G076500--Sobic002G037400 Sobic009G076500--Sobic006G026400 Sobic009G076500--Sobic006G203000 Sobic009G076500--Sobic009G167000 Sobic009G076500--Sobic004G244100 Sobic009G076500--Sobic008G059000 Sobic009G076500--Sobic006G194600
Octagon: transcription factors


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