Gene annotation
Transcriptome id Sobic.003G189700.3,Sobic.003G189700.2
Synonym
Functional annotation thioredoxin, putative, expressed
UniProt C5XNM2
Pfam PF06201
Panther DB PTHR12175
NCBI CDD KOG1730; Thioredoxin-like protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25950 : Protein of unknown function (DUF1000)
RAP-DB (Rice) LOC_Os01g37832.1 : thioredoxin, putative, expressed
MaizeGDB (Corn) Zm00025a028765
Brachypodium KQK08326 , KQK08327 , KQK08328
Barley HORVU3Hr1G048310.2 , HORVU3Hr1G048310.4 , HORVU3Hr1G048310.3
Wheat TraesCS3A02G203900 , TraesCS3B02G234000 , TraesCS3D02G207200
Populus -


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cDNA sequences
Sobic.003G189700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G017000 RNA recognition motif containing protein, putative, expressed -
2 Sobic.004G083000 CRAL/TRIO domain containing protein, expressed -
3 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
4 Sobic.006G217700 gamma-soluble NSF attachment protein, putative, expressed -
5 Sobic.002G236200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transcription factor BIM2, putative, expressed -
6 Sobic.002G395600 bZIP transcription factor domain containing protein, expressed -
7 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
9 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
10 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
11 Sobic.008G058700 metal cation transporter, putative, expressed -
12 Sobic.006G263100 expressed protein -
13 Sobic.002G348600 zinc finger family protein, putative, expressed -
14 Sobic.003G052400 proline-rich family protein, putative, expressed -
15 Sobic.003G036000 NADP-ME(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NADP-malic enzyme(PubMedID : 26904072)@-(PubMedID : 26976818)@NADP-dependent malic enzyme(PubMedID : 27016024)@NADP-dependent malic enzyme, chloroplast precursor, putative, expressed K00029: E1.1.1.40, malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)
16 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
17 Sobic.003G061900 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
18 Sobic.003G056500 staphylococcal nuclease homologue, putative, expressed -
19 Sobic.004G054300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@OTU-like cysteine protease family protein, putative, expressed -
20 Sobic.009G008600 REX1 DNA Repair family protein, expressed K10845: TTDA, GTF2H5, TFIIH basal transcription factor complex TTD-A subunit


Gene co-expression network
sample Sobic003G189700 Sobic003G189700 Sobic010G017000 Sobic010G017000 Sobic003G189700--Sobic010G017000 Sobic004G083000 Sobic004G083000 Sobic003G189700--Sobic004G083000 Sobic009G160200 Sobic009G160200 Sobic003G189700--Sobic009G160200 Sobic006G217700 Sobic006G217700 Sobic003G189700--Sobic006G217700 Sobic002G236200 Sobic002G236200 Sobic003G189700--Sobic002G236200 Sobic002G395600 Sobic002G395600 Sobic003G189700--Sobic002G395600 Sobic002G121000 Sobic002G121000 Sobic003G189700--Sobic002G121000 Sobic003G038600 Sobic003G038600 Sobic003G189700--Sobic003G038600 Sobic010G238700 Sobic010G238700 Sobic003G189700--Sobic010G238700 Sobic006G222400 Sobic006G222400 Sobic010G017000--Sobic006G222400 Sobic010G017000--Sobic006G217700 Sobic003G021200 Sobic003G021200 Sobic010G017000--Sobic003G021200 Sobic003G052400 Sobic003G052400 Sobic010G017000--Sobic003G052400 Sobic010G017000--Sobic009G160200 Sobic010G017000--Sobic003G038600 Sobic007G059900 Sobic007G059900 Sobic010G017000--Sobic007G059900 Sobic001G283500 Sobic001G283500 Sobic010G017000--Sobic001G283500 Sobic009G008600 Sobic009G008600 Sobic010G017000--Sobic009G008600 Sobic008G058700 Sobic008G058700 Sobic004G083000--Sobic008G058700 Sobic004G083000--Sobic003G189700 Sobic003G043400 Sobic003G043400 Sobic004G083000--Sobic003G043400 Sobic004G083000--Sobic010G017000 Sobic001G311100 Sobic001G311100 Sobic004G083000--Sobic001G311100 Sobic004G083000--Sobic009G160200 Sobic004G083000--Sobic006G217700 Sobic003G092700 Sobic003G092700 Sobic004G083000--Sobic003G092700 Sobic002G134400 Sobic002G134400 Sobic004G083000--Sobic002G134400 Sobic009G160200--Sobic001G283500 Sobic009G160200--Sobic006G222400 Sobic009G160200--Sobic001G311100 Sobic009G160200--Sobic010G017000 Sobic003G217100 Sobic003G217100 Sobic009G160200--Sobic003G217100 Sobic002G261900 Sobic002G261900 Sobic009G160200--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic009G160200--Sobic010G094600 Sobic009G160200--Sobic003G043400 Sobic009G160200--Sobic003G052400 Sobic006G217700--Sobic010G017000 Sobic009G238800 Sobic009G238800 Sobic006G217700--Sobic009G238800 Sobic001G323000 Sobic001G323000 Sobic006G217700--Sobic001G323000 Sobic010G016400 Sobic010G016400 Sobic006G217700--Sobic010G016400 Sobic004G054300 Sobic004G054300 Sobic006G217700--Sobic004G054300 Sobic004G132300 Sobic004G132300 Sobic006G217700--Sobic004G132300 Sobic001G057800 Sobic001G057800 Sobic006G217700--Sobic001G057800 Sobic001G033500 Sobic001G033500 Sobic006G217700--Sobic001G033500 Sobic007G148800 Sobic007G148800 Sobic006G217700--Sobic007G148800 Sobic002G236200--Sobic010G238700 Sobic002G236200--Sobic002G121000 Sobic001G230900 Sobic001G230900 Sobic002G236200--Sobic001G230900 Sobic009G036900 Sobic009G036900 Sobic002G236200--Sobic009G036900 Sobic009G157900 Sobic009G157900 Sobic002G236200--Sobic009G157900 Sobic002G068300 Sobic002G068300 Sobic002G236200--Sobic002G068300 Sobic002G236200--Sobic003G189700 Sobic009G034400 Sobic009G034400 Sobic002G236200--Sobic009G034400 Sobic010G144400 Sobic010G144400 Sobic002G236200--Sobic010G144400 Sobic006G263100 Sobic006G263100 Sobic002G395600--Sobic006G263100 Sobic003G392200 Sobic003G392200 Sobic002G395600--Sobic003G392200 Sobic001G214200 Sobic001G214200 Sobic002G395600--Sobic001G214200 Sobic002G330300 Sobic002G330300 Sobic002G395600--Sobic002G330300 Sobic007G178200 Sobic007G178200 Sobic002G395600--Sobic007G178200 Sobic002G395600--Sobic010G017000 Sobic004G026200 Sobic004G026200 Sobic002G395600--Sobic004G026200 Sobic004G280800 Sobic004G280800 Sobic002G395600--Sobic004G280800 Sobic002G395600--Sobic001G283500 Sobic007G038800 Sobic007G038800 Sobic002G121000--Sobic007G038800 Sobic002G121000--Sobic009G034400 Sobic002G121000--Sobic009G036900 Sobic002G276900 Sobic002G276900 Sobic002G121000--Sobic002G276900 Sobic002G121000--Sobic002G068300 Sobic004G122000 Sobic004G122000 Sobic002G121000--Sobic004G122000 Sobic002G121000--Sobic001G230900 Sobic003G416600 Sobic003G416600 Sobic002G121000--Sobic003G416600 Sobic001G424500 Sobic001G424500 Sobic002G121000--Sobic001G424500 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic010G238700--Sobic006G222400 Sobic001G529000 Sobic001G529000 Sobic010G238700--Sobic001G529000 Sobic010G238700--Sobic009G036900 Sobic001G126200 Sobic001G126200 Sobic010G238700--Sobic001G126200 Sobic003G382900 Sobic003G382900 Sobic010G238700--Sobic003G382900 Sobic004G203100 Sobic004G203100 Sobic010G238700--Sobic004G203100 Sobic003G007500 Sobic003G007500 Sobic010G238700--Sobic003G007500 Sobic008G132800 Sobic008G132800 Sobic010G238700--Sobic008G132800 Sobic001G010700 Sobic001G010700 Sobic010G238700--Sobic001G010700
Octagon: transcription factors


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