Gene annotation
Transcriptome id Sobic.004G259500.1
Synonym Sb04g029790
Functional annotation expressed protein
UniProt A0A1Z5RPZ4
Pfam -
Panther DB PTHR37222 PTHR37222:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12650 : -
RAP-DB (Rice) LOC_Os02g48680.1 : expressed protein
MaizeGDB (Corn) Zm00025a032579
Brachypodium PNT69315
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G259500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G188100 Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed K13429: chitin elicitor receptor kinase 1
2 Sobic.009G171100 prenylated rab acceptor, putative, expressed -
3 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
4 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
5 Sobic.003G294400 VQ domain containing protein, putative, expressed -
6 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
7 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
8 Sobic.008G016900 glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing)
9 Sobic.004G278000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
10 Sobic.003G111500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polyprenyl synthetase, putative, expressed K13789: geranylgeranyl diphosphate synthase, type II
11 Sobic.009G220200 exostosin family domain containing protein, expressed -
12 Sobic.001G012800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulatory protein, putative, expressed -
13 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
14 Sobic.003G392200 CXE carboxylesterase, putative, expressed -
15 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
16 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
17 Sobic.003G296700 protein kinase domain containing protein, expressed -
18 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
19 Sobic.002G362900 IBS1, putative, expressed -
20 Sobic.003G341100 WRKY24, expressed K13424: WRKY transcription factor 33


Gene co-expression network
sample Sobic004G259500 Sobic004G259500 Sobic007G188100 Sobic007G188100 Sobic004G259500--Sobic007G188100 Sobic009G171100 Sobic009G171100 Sobic004G259500--Sobic009G171100 Sobic002G353400 Sobic002G353400 Sobic004G259500--Sobic002G353400 Sobic003G425200 Sobic003G425200 Sobic004G259500--Sobic003G425200 Sobic003G294400 Sobic003G294400 Sobic004G259500--Sobic003G294400 Sobic001G525400 Sobic001G525400 Sobic004G259500--Sobic001G525400 Sobic002G379400 Sobic002G379400 Sobic004G259500--Sobic002G379400 Sobic008G016900 Sobic008G016900 Sobic004G259500--Sobic008G016900 Sobic004G278000 Sobic004G278000 Sobic004G259500--Sobic004G278000 Sobic010G228000 Sobic010G228000 Sobic007G188100--Sobic010G228000 Sobic002G362900 Sobic002G362900 Sobic007G188100--Sobic002G362900 Sobic007G188100--Sobic002G353400 Sobic002G374100 Sobic002G374100 Sobic007G188100--Sobic002G374100 Sobic007G188100--Sobic004G259500 Sobic007G188100--Sobic008G016900 Sobic002G330300 Sobic002G330300 Sobic007G188100--Sobic002G330300 Sobic010G062800 Sobic010G062800 Sobic007G188100--Sobic010G062800 Sobic002G118600 Sobic002G118600 Sobic007G188100--Sobic002G118600 Sobic009G171100--Sobic001G525400 Sobic001G441000 Sobic001G441000 Sobic009G171100--Sobic001G441000 Sobic003G253500 Sobic003G253500 Sobic009G171100--Sobic003G253500 Sobic009G171100--Sobic004G259500 Sobic001G408100 Sobic001G408100 Sobic009G171100--Sobic001G408100 Sobic009G171100--Sobic007G188100 Sobic009G171100--Sobic002G353400 Sobic003G392200 Sobic003G392200 Sobic009G171100--Sobic003G392200 Sobic009G182200 Sobic009G182200 Sobic009G171100--Sobic009G182200 Sobic002G353400--Sobic002G374100 Sobic002G343500 Sobic002G343500 Sobic002G353400--Sobic002G343500 Sobic002G353400--Sobic007G188100 Sobic001G341600 Sobic001G341600 Sobic002G353400--Sobic001G341600 Sobic001G516600 Sobic001G516600 Sobic002G353400--Sobic001G516600 Sobic009G217600 Sobic009G217600 Sobic002G353400--Sobic009G217600 Sobic002G353400--Sobic001G525400 Sobic002G294700 Sobic002G294700 Sobic002G353400--Sobic002G294700 Sobic009G027900 Sobic009G027900 Sobic002G353400--Sobic009G027900 Sobic006G146500 Sobic006G146500 Sobic003G425200--Sobic006G146500 Sobic003G341100 Sobic003G341100 Sobic003G425200--Sobic003G341100 Sobic007G201100 Sobic007G201100 Sobic003G425200--Sobic007G201100 Sobic002G207300 Sobic002G207300 Sobic003G425200--Sobic002G207300 Sobic007G011000 Sobic007G011000 Sobic003G425200--Sobic007G011000 Sobic004G065900 Sobic004G065900 Sobic003G425200--Sobic004G065900 Sobic001G370600 Sobic001G370600 Sobic003G425200--Sobic001G370600 Sobic007G145700 Sobic007G145700 Sobic003G425200--Sobic007G145700 Sobic003G425200--Sobic002G118600 Sobic003G294400--Sobic004G259500 Sobic003G294400--Sobic002G362900 Sobic005G211400 Sobic005G211400 Sobic003G294400--Sobic005G211400 Sobic004G145200 Sobic004G145200 Sobic003G294400--Sobic004G145200 Sobic001G012800 Sobic001G012800 Sobic003G294400--Sobic001G012800 Sobic003G294400--Sobic007G188100 Sobic010G236500 Sobic010G236500 Sobic003G294400--Sobic010G236500 Sobic003G296700 Sobic003G296700 Sobic003G294400--Sobic003G296700 Sobic009G220200 Sobic009G220200 Sobic003G294400--Sobic009G220200 Sobic001G525400--Sobic009G171100 Sobic001G525400--Sobic003G253500 Sobic001G525400--Sobic002G353400 Sobic001G525400--Sobic007G188100 Sobic001G525400--Sobic001G370600 Sobic001G525400--Sobic002G330300 Sobic001G525400--Sobic007G011000 Sobic003G338900 Sobic003G338900 Sobic001G525400--Sobic003G338900 Sobic001G525400--Sobic003G392200 Sobic004G025000 Sobic004G025000 Sobic002G379400--Sobic004G025000 Sobic002G379400--Sobic002G330300 Sobic002G379400--Sobic003G338900 Sobic002G379400--Sobic008G016900 Sobic002G379400--Sobic010G228000 Sobic002G379400--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G379400--Sobic006G263100 Sobic001G436000 Sobic001G436000 Sobic002G379400--Sobic001G436000 Sobic002G379400--Sobic002G294700 Sobic008G016900--Sobic002G330300 Sobic008G016900--Sobic002G379400 Sobic008G016900--Sobic010G062800 Sobic001G283500 Sobic001G283500 Sobic008G016900--Sobic001G283500 Sobic008G016900--Sobic007G188100 Sobic008G016900--Sobic004G145200 Sobic001G162100 Sobic001G162100 Sobic008G016900--Sobic001G162100 Sobic009G059700 Sobic009G059700 Sobic008G016900--Sobic009G059700 Sobic008G016900--Sobic002G343500 Sobic001G409900 Sobic001G409900 Sobic004G278000--Sobic001G409900 Sobic004G278000--Sobic006G263100 Sobic004G278000--Sobic002G118600 Sobic008G129000 Sobic008G129000 Sobic004G278000--Sobic008G129000 Sobic004G278000--Sobic004G259500 Sobic004G278000--Sobic009G171100 Sobic004G280800 Sobic004G280800 Sobic004G278000--Sobic004G280800 Sobic004G278000--Sobic003G425200 Sobic004G278000--Sobic003G392200
Octagon: transcription factors


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