Gene annotation
Transcriptome id Sobic.003G111500.1
Synonym GGPS1, Sb03g009380
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
polyprenyl synthetase, putative, expressed
UniProt A0A1W0VWW1
Pfam PF00348
Panther DB PTHR12001 PTHR12001:SF54
NCBI CDD KOG0776; Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase
KEGG Orthology K13789; geranylgeranyl diphosphate synthase, type II
Gene Ontology GO:0008299; isoprenoid biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G36810 : geranylgeranyl pyrophosphate synthase 1
RAP-DB (Rice) LOC_Os01g14630.1 : polyprenyl synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a035372
Brachypodium -
Barley HORVU6Hr1G018080.1 , HORVU5Hr1G122550.1 , HORVU5Hr1G122440.1 , HORVU5Hr1G122440.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G379400 CAMK_CAMK_like.7 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K14498: serine/threonine-protein kinase SRK2
2 Sobic.001G516600 AMP-binding domain containing protein, expressed K10526: OPC-8:0 CoA ligase 1
3 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
4 Sobic.009G220200 exostosin family domain containing protein, expressed -
5 Sobic.003G296700 protein kinase domain containing protein, expressed -
6 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
7 Sobic.002G118600 SNARE domain containing protein, putative, expressed K18211: synaptosomal-associated protein 25
8 Sobic.004G259500 expressed protein -
9 Sobic.003G373000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.008G151300 expressed protein -
11 Sobic.002G343500 CAMK_CAMK_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.001G217000 DUF584 domain containing protein, putative, expressed -
13 Sobic.002G210300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@hypro1, putative, expressed -
14 Sobic.001G341600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed -
15 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
16 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
17 Sobic.010G200700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.003G012800 AP2 domain containing protein, expressed -
19 Sobic.001G206400 fiber protein Fb34, putative, expressed -
20 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -


Gene co-expression network
sample Sobic003G111500 Sobic003G111500 Sobic002G379400 Sobic002G379400 Sobic003G111500--Sobic002G379400 Sobic001G516600 Sobic001G516600 Sobic003G111500--Sobic001G516600 Sobic002G374100 Sobic002G374100 Sobic003G111500--Sobic002G374100 Sobic009G220200 Sobic009G220200 Sobic003G111500--Sobic009G220200 Sobic003G296700 Sobic003G296700 Sobic003G111500--Sobic003G296700 Sobic002G294700 Sobic002G294700 Sobic003G111500--Sobic002G294700 Sobic002G118600 Sobic002G118600 Sobic003G111500--Sobic002G118600 Sobic004G259500 Sobic004G259500 Sobic003G111500--Sobic004G259500 Sobic003G373000 Sobic003G373000 Sobic003G111500--Sobic003G373000 Sobic004G025000 Sobic004G025000 Sobic002G379400--Sobic004G025000 Sobic002G330300 Sobic002G330300 Sobic002G379400--Sobic002G330300 Sobic003G338900 Sobic003G338900 Sobic002G379400--Sobic003G338900 Sobic008G016900 Sobic008G016900 Sobic002G379400--Sobic008G016900 Sobic010G228000 Sobic010G228000 Sobic002G379400--Sobic010G228000 Sobic002G379400--Sobic002G118600 Sobic006G263100 Sobic006G263100 Sobic002G379400--Sobic006G263100 Sobic001G436000 Sobic001G436000 Sobic002G379400--Sobic001G436000 Sobic002G379400--Sobic002G294700 Sobic001G173300 Sobic001G173300 Sobic001G516600--Sobic001G173300 Sobic007G151100 Sobic007G151100 Sobic001G516600--Sobic007G151100 Sobic003G037800 Sobic003G037800 Sobic001G516600--Sobic003G037800 Sobic001G516600--Sobic003G296700 Sobic010G268400 Sobic010G268400 Sobic001G516600--Sobic010G268400 Sobic001G532200 Sobic001G532200 Sobic001G516600--Sobic001G532200 Sobic006G131400 Sobic006G131400 Sobic001G516600--Sobic006G131400 Sobic008G177800 Sobic008G177800 Sobic001G516600--Sobic008G177800 Sobic002G245100 Sobic002G245100 Sobic001G516600--Sobic002G245100 Sobic002G374100--Sobic002G294700 Sobic010G246000 Sobic010G246000 Sobic002G374100--Sobic010G246000 Sobic002G374100--Sobic001G516600 Sobic002G354900 Sobic002G354900 Sobic002G374100--Sobic002G354900 Sobic002G374100--Sobic010G228000 Sobic004G036600 Sobic004G036600 Sobic002G374100--Sobic004G036600 Sobic002G353400 Sobic002G353400 Sobic002G374100--Sobic002G353400 Sobic002G374100--Sobic008G177800 Sobic002G374100--Sobic002G118600 Sobic009G208800 Sobic009G208800 Sobic009G220200--Sobic009G208800 Sobic009G220200--Sobic003G296700 Sobic001G051800 Sobic001G051800 Sobic009G220200--Sobic001G051800 Sobic009G220200--Sobic001G516600 Sobic009G220200--Sobic001G173300 Sobic004G257300 Sobic004G257300 Sobic009G220200--Sobic004G257300 Sobic009G220200--Sobic002G374100 Sobic002G362900 Sobic002G362900 Sobic009G220200--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic009G220200--Sobic007G188100 Sobic003G296700--Sobic001G516600 Sobic003G296700--Sobic009G208800 Sobic003G296700--Sobic009G220200 Sobic001G341600 Sobic001G341600 Sobic003G296700--Sobic001G341600 Sobic009G217600 Sobic009G217600 Sobic003G296700--Sobic009G217600 Sobic010G076600 Sobic010G076600 Sobic003G296700--Sobic010G076600 Sobic006G095600 Sobic006G095600 Sobic003G296700--Sobic006G095600 Sobic003G296700--Sobic002G374100 Sobic003G296700--Sobic002G294700 Sobic002G294700--Sobic008G177800 Sobic010G234600 Sobic010G234600 Sobic002G294700--Sobic010G234600 Sobic006G231100 Sobic006G231100 Sobic002G294700--Sobic006G231100 Sobic002G294700--Sobic002G374100 Sobic004G286600 Sobic004G286600 Sobic002G294700--Sobic004G286600 Sobic001G077700 Sobic001G077700 Sobic002G294700--Sobic001G077700 Sobic002G294700--Sobic010G246000 Sobic002G294700--Sobic004G036600 Sobic002G278500 Sobic002G278500 Sobic002G294700--Sobic002G278500 Sobic001G147200 Sobic001G147200 Sobic002G118600--Sobic001G147200 Sobic002G118600--Sobic001G341600 Sobic003G341100 Sobic003G341100 Sobic002G118600--Sobic003G341100 Sobic002G118600--Sobic010G228000 Sobic002G118600--Sobic002G374100 Sobic001G290400 Sobic001G290400 Sobic002G118600--Sobic001G290400 Sobic007G011000 Sobic007G011000 Sobic002G118600--Sobic007G011000 Sobic001G538866 Sobic001G538866 Sobic002G118600--Sobic001G538866 Sobic006G228300 Sobic006G228300 Sobic002G118600--Sobic006G228300 Sobic004G259500--Sobic007G188100 Sobic009G171100 Sobic009G171100 Sobic004G259500--Sobic009G171100 Sobic004G259500--Sobic002G353400 Sobic003G425200 Sobic003G425200 Sobic004G259500--Sobic003G425200 Sobic003G294400 Sobic003G294400 Sobic004G259500--Sobic003G294400 Sobic001G525400 Sobic001G525400 Sobic004G259500--Sobic001G525400 Sobic004G259500--Sobic002G379400 Sobic004G259500--Sobic008G016900 Sobic004G278000 Sobic004G278000 Sobic004G259500--Sobic004G278000 Sobic010G200700 Sobic010G200700 Sobic003G373000--Sobic010G200700 Sobic003G012800 Sobic003G012800 Sobic003G373000--Sobic003G012800 Sobic002G036100 Sobic002G036100 Sobic003G373000--Sobic002G036100 Sobic003G373000--Sobic004G286600 Sobic010G245800 Sobic010G245800 Sobic003G373000--Sobic010G245800 Sobic006G089300 Sobic006G089300 Sobic003G373000--Sobic006G089300 Sobic009G066800 Sobic009G066800 Sobic003G373000--Sobic009G066800 Sobic001G513700 Sobic001G513700 Sobic003G373000--Sobic001G513700 Sobic001G077400 Sobic001G077400 Sobic003G373000--Sobic001G077400
Octagon: transcription factors


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