Gene annotation
| Transcriptome id | Sobic.009G171100.1 |
|---|---|
| Synonym | PRA1.B2, Sb09g023220 |
| Functional annotation | prenylated rab acceptor, putative, expressed |
| UniProt | A0A1B6P993 |
| Pfam | PF03208 |
| Panther DB | PTHR19317 PTHR19317:SF8 |
| NCBI CDD | KOG3142; Prenylated rab acceptor 1 |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G38360 : prenylated RAB acceptor 1.B4 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g39670.1 : prenylated rab acceptor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a043961 , Zm00025a037781 , Zm00025a033283 |
| Brachypodium | KQK05788 , KQK10392 , PNT71065 |
| Barley | HORVU2Hr1G086930.1 , HORVU3Hr1G088130.1 , HORVU3Hr1G088130.2 , HORVU5Hr1G047520.1 , HORVU5Hr1G047520.2 , HORVU1Hr1G070360.1 , HORVU1Hr1G070360.2 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.009G171100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G525400 | receptor-like protein kinase At3g46290 precursor, putative, expressed | - |
| 2 | Sobic.001G441000 | erwinia induced protein 2, putative, expressed | - |
| 3 | Sobic.003G253500 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 4 | Sobic.004G259500 | expressed protein | - |
| 5 | Sobic.001G408100 | Yip1 domain containing protein, expressed | - |
| 6 | Sobic.007G188100 | Candidate orthologue to the wheat Pm40 gene(PubMedID : 27755575)@protein kinase domain containing protein, expressed | K13429: chitin elicitor receptor kinase 1 |
| 7 | Sobic.002G353400 | transporter-related, putative, expressed | K15285: solute carrier family 35, member E3 |
| 8 | Sobic.003G392200 | CXE carboxylesterase, putative, expressed | - |
| 9 | Sobic.009G182200 | domain of unknown function, DUF250 domain containing protein, expressed | - |
| 10 | Sobic.004G026200 | SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.004G278000 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | K19042: E3 ubiquitin-protein ligase BOI and related proteins |
| 12 | Sobic.004G257300 | GPI-anchored protein, putative, expressed | - |
| 13 | Sobic.003G227200 | mitochondrial import receptor subunit TOM7-1, putative, expressed | K17771: mitochondrial import receptor subunit TOM7 |
| 14 | Sobic.001G370600 | expressed protein | - |
| 15 | Sobic.004G280800 | Tannin1 encodes a WD40 protein homologous to the Arabidopsis proanthocyanidin regulator transparent testa glabra1 (TTG1). (PubmedID : 25272193)@WD40 protein(PubMedID : 22699509)@Transcription factor for tannin accumulation in seed(PubMedID : 22699509)@WD domain, G-beta repeat domain containing protein, expressed | K11805: DCAF7, DDB1- and CUL4-associated factor 7 |
| 16 | Sobic.008G016900 | glucosamine--fructose-6-phosphate aminotransferase 1, putative, expressed | K00820: glmS, glutamine---fructose-6-phosphate transaminase (isomerizing) |
| 17 | Sobic.006G263100 | expressed protein | - |
| 18 | Sobic.001G409900 | transporter, putative, expressed | - |
| 19 | Sobic.010G178800 | solute carrier family 35 member B1, putative, expressed | K15275: solute carrier family 35 (UDP-galactose transporter), member B1 |
| 20 | Sobic.003G217100 | Yip1 domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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