Gene annotation
Transcriptome id Sobic.004G323600.1
Synonym ATMEK5, MAP2K_A, ATMKK5, MEK5, MKK5, Sb04g035370, ATMAP2K_ALPHA
Functional annotation "SMG1(Ortholog in rice:Duan et al., 2014)" (PubMedID : 31659892)
STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
UniProt A0A1Z5RPZ9
Pfam PF00069
Panther DB PTHR24361 PTHR24361:SF319
NCBI CDD KOG0581; Mitogen-activated protein kinase kinase (MAP2K)
KEGG Orthology K13413; mitogen-activated protein kinase kinase 4/5
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G51660 : mitogen-activated protein kinase kinase 4
RAP-DB (Rice) LOC_Os02g54600.1 : STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
MaizeGDB (Corn) Zm00025a022399 , Zm00025a032976 , Zm00025a049717
Brachypodium KQK01065 , KQK13534 , KQK19193 , KQK13637
Barley HORVU7Hr1G031720.2 , HORVU7Hr1G031720.3 , HORVU7Hr1G031720.1 , HORVU5Hr1G067100.1 , HORVU5Hr1G067100.3 , HORVU5Hr1G067100.2 , HORVU0Hr1G038850.2 , HORVU0Hr1G038850.3 , HORVU0Hr1G038850.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G323600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G278000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
2 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
3 Sobic.010G178800 solute carrier family 35 member B1, putative, expressed K15275: solute carrier family 35 (UDP-galactose transporter), member B1
4 Sobic.004G259500 expressed protein -
5 Sobic.003G253500 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
6 Sobic.008G129000 phosphatidic acid phosphatase-related, putative, expressed -
7 Sobic.007G201100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxysterol-binding protein, putative, expressed -
8 Sobic.003G416500 SRC2 protein, putative, expressed -
9 Sobic.004G268900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.001G525400 receptor-like protein kinase At3g46290 precursor, putative, expressed -
11 Sobic.006G146500 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
12 Sobic.006G100700 expressed protein -
13 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
14 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
15 Sobic.003G425200 Calmodulin-like protein 1(PubMedID : 24906815)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calmodulin-like protein 1, putative, expressed K13448: calcium-binding protein CML
16 Sobic.007G011200 DNA binding protein, putative, expressed -
17 Sobic.002G207300 tetraspanin family protein, putative, expressed -
18 Sobic.001G370600 expressed protein -
19 Sobic.001G216300 glutaredoxin domain containing protein, putative, expressed -
20 Sobic.009G171100 prenylated rab acceptor, putative, expressed -


Gene co-expression network
sample Sobic004G323600 Sobic004G323600 Sobic004G278000 Sobic004G278000 Sobic004G323600--Sobic004G278000 Sobic004G086800 Sobic004G086800 Sobic004G323600--Sobic004G086800 Sobic010G178800 Sobic010G178800 Sobic004G323600--Sobic010G178800 Sobic004G259500 Sobic004G259500 Sobic004G323600--Sobic004G259500 Sobic003G253500 Sobic003G253500 Sobic004G323600--Sobic003G253500 Sobic008G129000 Sobic008G129000 Sobic004G323600--Sobic008G129000 Sobic007G201100 Sobic007G201100 Sobic004G323600--Sobic007G201100 Sobic003G416500 Sobic003G416500 Sobic004G323600--Sobic003G416500 Sobic004G268900 Sobic004G268900 Sobic004G323600--Sobic004G268900 Sobic001G409900 Sobic001G409900 Sobic004G278000--Sobic001G409900 Sobic006G263100 Sobic006G263100 Sobic004G278000--Sobic006G263100 Sobic002G118600 Sobic002G118600 Sobic004G278000--Sobic002G118600 Sobic004G278000--Sobic008G129000 Sobic004G278000--Sobic004G259500 Sobic009G171100 Sobic009G171100 Sobic004G278000--Sobic009G171100 Sobic004G280800 Sobic004G280800 Sobic004G278000--Sobic004G280800 Sobic003G425200 Sobic003G425200 Sobic004G278000--Sobic003G425200 Sobic003G392200 Sobic003G392200 Sobic004G278000--Sobic003G392200 Sobic009G010400 Sobic009G010400 Sobic004G086800--Sobic009G010400 Sobic004G086800--Sobic003G416500 Sobic006G259000 Sobic006G259000 Sobic004G086800--Sobic006G259000 Sobic004G065900 Sobic004G065900 Sobic004G086800--Sobic004G065900 Sobic002G323900 Sobic002G323900 Sobic004G086800--Sobic002G323900 Sobic001G489500 Sobic001G489500 Sobic004G086800--Sobic001G489500 Sobic010G102000 Sobic010G102000 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic001G287600 Sobic001G287600 Sobic004G086800--Sobic001G287600 Sobic003G402600 Sobic003G402600 Sobic010G178800--Sobic003G402600 Sobic010G178800--Sobic009G171100 Sobic001G408100 Sobic001G408100 Sobic010G178800--Sobic001G408100 Sobic010G178800--Sobic004G323600 Sobic005G184200 Sobic005G184200 Sobic010G178800--Sobic005G184200 Sobic009G050000 Sobic009G050000 Sobic010G178800--Sobic009G050000 Sobic004G025300 Sobic004G025300 Sobic010G178800--Sobic004G025300 Sobic001G441000 Sobic001G441000 Sobic010G178800--Sobic001G441000 Sobic010G178800--Sobic003G253500 Sobic007G188100 Sobic007G188100 Sobic004G259500--Sobic007G188100 Sobic004G259500--Sobic009G171100 Sobic002G353400 Sobic002G353400 Sobic004G259500--Sobic002G353400 Sobic004G259500--Sobic003G425200 Sobic003G294400 Sobic003G294400 Sobic004G259500--Sobic003G294400 Sobic001G525400 Sobic001G525400 Sobic004G259500--Sobic001G525400 Sobic002G379400 Sobic002G379400 Sobic004G259500--Sobic002G379400 Sobic008G016900 Sobic008G016900 Sobic004G259500--Sobic008G016900 Sobic004G259500--Sobic004G278000 Sobic003G253500--Sobic001G525400 Sobic003G253500--Sobic009G171100 Sobic004G257300 Sobic004G257300 Sobic003G253500--Sobic004G257300 Sobic003G253500--Sobic004G280800 Sobic004G259600 Sobic004G259600 Sobic003G253500--Sobic004G259600 Sobic001G489600 Sobic001G489600 Sobic003G253500--Sobic001G489600 Sobic001G173300 Sobic001G173300 Sobic003G253500--Sobic001G173300 Sobic010G030900 Sobic010G030900 Sobic003G253500--Sobic010G030900 Sobic003G227200 Sobic003G227200 Sobic003G253500--Sobic003G227200 Sobic001G308700 Sobic001G308700 Sobic008G129000--Sobic001G308700 Sobic001G284400 Sobic001G284400 Sobic008G129000--Sobic001G284400 Sobic001G513300 Sobic001G513300 Sobic008G129000--Sobic001G513300 Sobic008G129000--Sobic004G278000 Sobic002G183400 Sobic002G183400 Sobic008G129000--Sobic002G183400 Sobic006G230400 Sobic006G230400 Sobic008G129000--Sobic006G230400 Sobic004G268200 Sobic004G268200 Sobic008G129000--Sobic004G268200 Sobic004G228700 Sobic004G228700 Sobic008G129000--Sobic004G228700 Sobic003G273000 Sobic003G273000 Sobic008G129000--Sobic003G273000 Sobic002G207300 Sobic002G207300 Sobic007G201100--Sobic002G207300 Sobic007G201100--Sobic004G065900 Sobic007G201100--Sobic003G425200 Sobic003G341100 Sobic003G341100 Sobic007G201100--Sobic003G341100 Sobic007G077100 Sobic007G077100 Sobic007G201100--Sobic007G077100 Sobic009G217500 Sobic009G217500 Sobic007G201100--Sobic009G217500 Sobic006G146500 Sobic006G146500 Sobic007G201100--Sobic006G146500 Sobic002G367900 Sobic002G367900 Sobic007G201100--Sobic002G367900 Sobic007G145700 Sobic007G145700 Sobic007G201100--Sobic007G145700 Sobic003G416500--Sobic001G489500 Sobic010G023200 Sobic010G023200 Sobic003G416500--Sobic010G023200 Sobic003G416500--Sobic006G259000 Sobic003G416500--Sobic007G077100 Sobic003G416500--Sobic009G217500 Sobic006G273800 Sobic006G273800 Sobic003G416500--Sobic006G273800 Sobic009G120800 Sobic009G120800 Sobic003G416500--Sobic009G120800 Sobic003G416500--Sobic002G323900 Sobic010G105300 Sobic010G105300 Sobic003G416500--Sobic010G105300 Sobic004G268900--Sobic004G323600 Sobic004G268900--Sobic004G065900 Sobic004G187800 Sobic004G187800 Sobic004G268900--Sobic004G187800 Sobic004G268900--Sobic002G207300 Sobic002G294600 Sobic002G294600 Sobic004G268900--Sobic002G294600 Sobic004G268900--Sobic004G086800 Sobic004G268900--Sobic001G287600 Sobic002G185200 Sobic002G185200 Sobic004G268900--Sobic002G185200 Sobic002G080100 Sobic002G080100 Sobic004G268900--Sobic002G080100
Octagon: transcription factors


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