Gene annotation
Transcriptome id Sobic.004G268900.1
Synonym Sb04g030680
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5Y0C7
Pfam PF06749
Panther DB PTHR31769 PTHR31769:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31720 : Protein of unknown function (DUF1218)
RAP-DB (Rice) LOC_Os02g47450.1 : expressed protein
MaizeGDB (Corn) Zm00025a021699
Brachypodium KQK00919 , KQK00918
Barley -
Wheat TraesCS6B02G298200 , TraesCS6A02G271100 , TraesCS6D02G244000 , TraesCS6A02G271100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G323600 "SMG1(Ortholog in rice:Duan et al., 2014)"(PubMedID : 31659892)@STE_MEK_ste7_MAP2K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K13413: mitogen-activated protein kinase kinase 4/5
2 Sobic.004G065900 CML (Calmodulin like protein) with WRKY-binding domain(PubMedID : 31721651)@transcription factor(PubMedID : 30367619)@WRKY71, expressed -
3 Sobic.004G187800 RING-H2 finger protein ATL1O, putative, expressed -
4 Sobic.002G207300 tetraspanin family protein, putative, expressed -
5 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
6 Sobic.004G086800 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
7 Sobic.001G287600 transcription factor MYC7E, putative, expressed K13422: transcription factor MYC2
8 Sobic.002G185200 VQ domain containing protein, putative, expressed -
9 Sobic.002G080100 NAC domain-containing protein 67, putative, expressed -
10 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
11 Sobic.001G118900 DUF292 domain containing protein, expressed -
12 Sobic.001G406300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.001G095700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
15 Sobic.002G418900 expressed protein -
16 Sobic.001G216300 glutaredoxin domain containing protein, putative, expressed -
17 Sobic.009G157100 transferase family protein, putative, expressed -
18 Sobic.001G410100 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
19 Sobic.007G051800 down-regulated TF in developmental senescence(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
20 Sobic.001G131200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@PB1 domain containing protein, expressed -


Gene co-expression network
sample Sobic004G268900 Sobic004G268900 Sobic004G323600 Sobic004G323600 Sobic004G268900--Sobic004G323600 Sobic004G065900 Sobic004G065900 Sobic004G268900--Sobic004G065900 Sobic004G187800 Sobic004G187800 Sobic004G268900--Sobic004G187800 Sobic002G207300 Sobic002G207300 Sobic004G268900--Sobic002G207300 Sobic002G294600 Sobic002G294600 Sobic004G268900--Sobic002G294600 Sobic004G086800 Sobic004G086800 Sobic004G268900--Sobic004G086800 Sobic001G287600 Sobic001G287600 Sobic004G268900--Sobic001G287600 Sobic002G185200 Sobic002G185200 Sobic004G268900--Sobic002G185200 Sobic002G080100 Sobic002G080100 Sobic004G268900--Sobic002G080100 Sobic004G278000 Sobic004G278000 Sobic004G323600--Sobic004G278000 Sobic004G323600--Sobic004G086800 Sobic010G178800 Sobic010G178800 Sobic004G323600--Sobic010G178800 Sobic004G259500 Sobic004G259500 Sobic004G323600--Sobic004G259500 Sobic003G253500 Sobic003G253500 Sobic004G323600--Sobic003G253500 Sobic008G129000 Sobic008G129000 Sobic004G323600--Sobic008G129000 Sobic007G201100 Sobic007G201100 Sobic004G323600--Sobic007G201100 Sobic003G416500 Sobic003G416500 Sobic004G323600--Sobic003G416500 Sobic004G323600--Sobic004G268900 Sobic004G065900--Sobic002G207300 Sobic001G095700 Sobic001G095700 Sobic004G065900--Sobic001G095700 Sobic002G367900 Sobic002G367900 Sobic004G065900--Sobic002G367900 Sobic001G118900 Sobic001G118900 Sobic004G065900--Sobic001G118900 Sobic004G065900--Sobic002G294600 Sobic006G146500 Sobic006G146500 Sobic004G065900--Sobic006G146500 Sobic004G065900--Sobic007G201100 Sobic007G145700 Sobic007G145700 Sobic004G065900--Sobic007G145700 Sobic009G010400 Sobic009G010400 Sobic004G065900--Sobic009G010400 Sobic004G187800--Sobic002G294600 Sobic004G187800--Sobic002G185200 Sobic004G187800--Sobic009G010400 Sobic004G187800--Sobic004G065900 Sobic002G418900 Sobic002G418900 Sobic004G187800--Sobic002G418900 Sobic004G006500 Sobic004G006500 Sobic004G187800--Sobic004G006500 Sobic001G406300 Sobic001G406300 Sobic004G187800--Sobic001G406300 Sobic004G297600 Sobic004G297600 Sobic004G187800--Sobic004G297600 Sobic004G187800--Sobic002G207300 Sobic002G207300--Sobic004G065900 Sobic002G207300--Sobic002G367900 Sobic002G207300--Sobic007G201100 Sobic002G207300--Sobic006G146500 Sobic002G207300--Sobic001G118900 Sobic003G425200 Sobic003G425200 Sobic002G207300--Sobic003G425200 Sobic002G207300--Sobic002G294600 Sobic001G410100 Sobic001G410100 Sobic002G207300--Sobic001G410100 Sobic002G207300--Sobic001G095700 Sobic002G294600--Sobic007G145700 Sobic001G462800 Sobic001G462800 Sobic002G294600--Sobic001G462800 Sobic002G294600--Sobic001G095700 Sobic002G294600--Sobic002G367900 Sobic002G294600--Sobic004G065900 Sobic002G217100 Sobic002G217100 Sobic002G294600--Sobic002G217100 Sobic003G341100 Sobic003G341100 Sobic002G294600--Sobic003G341100 Sobic002G294600--Sobic006G146500 Sobic002G294600--Sobic001G118900 Sobic004G086800--Sobic009G010400 Sobic004G086800--Sobic003G416500 Sobic006G259000 Sobic006G259000 Sobic004G086800--Sobic006G259000 Sobic004G086800--Sobic004G065900 Sobic002G323900 Sobic002G323900 Sobic004G086800--Sobic002G323900 Sobic001G489500 Sobic001G489500 Sobic004G086800--Sobic001G489500 Sobic010G102000 Sobic010G102000 Sobic004G086800--Sobic010G102000 Sobic002G138700 Sobic002G138700 Sobic004G086800--Sobic002G138700 Sobic004G086800--Sobic001G287600 Sobic001G287600--Sobic001G410100 Sobic001G287600--Sobic004G065900 Sobic001G287600--Sobic004G086800 Sobic001G287600--Sobic002G207300 Sobic001G370600 Sobic001G370600 Sobic001G287600--Sobic001G370600 Sobic007G011000 Sobic007G011000 Sobic001G287600--Sobic007G011000 Sobic001G287600--Sobic007G201100 Sobic001G287600--Sobic009G010400 Sobic001G287600--Sobic010G102000 Sobic002G185200--Sobic004G006500 Sobic002G185200--Sobic002G418900 Sobic002G185200--Sobic002G294600 Sobic002G185200--Sobic004G065900 Sobic002G185200--Sobic001G118900 Sobic002G185200--Sobic006G146500 Sobic007G143400 Sobic007G143400 Sobic002G185200--Sobic007G143400 Sobic006G114200 Sobic006G114200 Sobic002G185200--Sobic006G114200 Sobic002G185200--Sobic004G086800 Sobic002G080100--Sobic004G065900 Sobic007G077100 Sobic007G077100 Sobic002G080100--Sobic007G077100 Sobic001G192800 Sobic001G192800 Sobic002G080100--Sobic001G192800 Sobic002G080100--Sobic002G207300 Sobic009G157100 Sobic009G157100 Sobic002G080100--Sobic009G157100 Sobic002G080100--Sobic003G341100 Sobic002G080100--Sobic006G146500 Sobic006G210300 Sobic006G210300 Sobic002G080100--Sobic006G210300 Sobic002G080100--Sobic007G201100
Octagon: transcription factors


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