Gene annotation
Transcriptome id Sobic.002G272600.1
Synonym Sb02g030630
Functional annotation TBC domain containing protein, expressed
UniProt C5X654
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF277
NCBI CDD KOG2197; Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G41940 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os09g35960.1 : TBC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047727 , Zm00025a005711 , Zm00025a014410
Brachypodium KQJ91147 , KQJ91146 , KQJ99269
Barley HORVU5Hr1G081040.6 , HORVU7Hr1G057010.9 , HORVU7Hr1G057010.6 , HORVU7Hr1G057010.4 , HORVU5Hr1G081040.10 , HORVU5Hr1G081040.1 , HORVU5Hr1G081040.2 , HORVU5Hr1G081040.4 , HORVU5Hr1G081040.5 , HORVU7Hr1G057010.8 , HORVU5Hr1G081040.8 , HORVU7Hr1G057010.7 , HORVU7Hr1G057010.5 , HORVU7Hr1G057010.3 , HORVU7Hr1G057010.1 , HORVU5Hr1G081040.3
Wheat TraesCS7A02G270600 , TraesCS5B02G317100 , TraesCS5D02G322800 , TraesCS7B02G168700 , TraesCS7D02G271000 , TraesCS5A02G316500 , TraesCS5A02G316500
Populus -


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cDNA sequences
Sobic.002G272600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
2 Sobic.001G080000 expressed protein -
3 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
4 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
5 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
6 Sobic.007G205000 zinc finger family protein, putative, expressed -
7 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
8 Sobic.003G350600 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
9 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
10 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
11 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
12 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
13 Sobic.002G180000 protein kinase domain containing protein, expressed -
14 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
15 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
16 Sobic.006G110300 SAM domain containing protein, putative, expressed -
17 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
18 Sobic.008G142700 expressed protein -
19 Sobic.004G059000 serine/threonine-protein kinase HT1, putative, expressed -
20 Sobic.004G305600 SKIP/SNW domain containing protein, expressed K06063: SNW1, SKIIP, SNW domain-containing protein 1


Gene co-expression network
sample Sobic002G272600 Sobic002G272600 Sobic001G061700 Sobic001G061700 Sobic002G272600--Sobic001G061700 Sobic001G080000 Sobic001G080000 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic003G405700 Sobic003G405700 Sobic002G272600--Sobic003G405700 Sobic010G105600 Sobic010G105600 Sobic002G272600--Sobic010G105600 Sobic007G205000 Sobic007G205000 Sobic002G272600--Sobic007G205000 Sobic003G038600 Sobic003G038600 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic010G219100 Sobic010G219100 Sobic002G272600--Sobic010G219100 Sobic004G059000 Sobic004G059000 Sobic001G061700--Sobic004G059000 Sobic001G061700--Sobic002G272600 Sobic001G061700--Sobic003G350600 Sobic001G061700--Sobic007G205000 Sobic002G365100 Sobic002G365100 Sobic001G061700--Sobic002G365100 Sobic001G061700--Sobic010G105600 Sobic003G273500 Sobic003G273500 Sobic001G061700--Sobic003G273500 Sobic001G028400 Sobic001G028400 Sobic001G061700--Sobic001G028400 Sobic002G378200 Sobic002G378200 Sobic001G061700--Sobic002G378200 Sobic001G080000--Sobic003G405700 Sobic008G139700 Sobic008G139700 Sobic001G080000--Sobic008G139700 Sobic001G080000--Sobic002G272600 Sobic002G180000 Sobic002G180000 Sobic001G080000--Sobic002G180000 Sobic001G080000--Sobic010G105600 Sobic001G080000--Sobic001G143500 Sobic001G010600 Sobic001G010600 Sobic001G080000--Sobic001G010600 Sobic003G045400 Sobic003G045400 Sobic001G080000--Sobic003G045400 Sobic001G080000--Sobic007G205000 Sobic006G252700 Sobic006G252700 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic004G350100 Sobic004G350100 Sobic001G143500--Sobic004G350100 Sobic003G401100 Sobic003G401100 Sobic001G143500--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic001G143500--Sobic003G439800 Sobic001G466700 Sobic001G466700 Sobic001G143500--Sobic001G466700 Sobic006G278700 Sobic006G278700 Sobic001G143500--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G143500--Sobic006G267300 Sobic004G305600 Sobic004G305600 Sobic003G405700--Sobic004G305600 Sobic003G405700--Sobic001G080000 Sobic006G183000 Sobic006G183000 Sobic003G405700--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic003G405700--Sobic002G129000 Sobic003G405700--Sobic010G105600 Sobic009G050700 Sobic009G050700 Sobic003G405700--Sobic009G050700 Sobic001G136900 Sobic001G136900 Sobic003G405700--Sobic001G136900 Sobic003G405700--Sobic004G059000 Sobic003G405700--Sobic002G272600 Sobic001G237500 Sobic001G237500 Sobic010G105600--Sobic001G237500 Sobic001G105100 Sobic001G105100 Sobic010G105600--Sobic001G105100 Sobic010G105600--Sobic003G405700 Sobic001G067900 Sobic001G067900 Sobic010G105600--Sobic001G067900 Sobic003G400100 Sobic003G400100 Sobic010G105600--Sobic003G400100 Sobic006G257001 Sobic006G257001 Sobic010G105600--Sobic006G257001 Sobic010G105600--Sobic002G272600 Sobic010G105600--Sobic001G061700 Sobic006G034800 Sobic006G034800 Sobic010G105600--Sobic006G034800 Sobic007G205000--Sobic001G028400 Sobic007G205000--Sobic006G278700 Sobic007G118200 Sobic007G118200 Sobic007G205000--Sobic007G118200 Sobic009G198100 Sobic009G198100 Sobic007G205000--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic007G205000--Sobic010G033400 Sobic004G013600 Sobic004G013600 Sobic007G205000--Sobic004G013600 Sobic007G205000--Sobic006G267300 Sobic007G205000--Sobic001G010600 Sobic007G205000--Sobic004G350100 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic004G072800 Sobic004G072800 Sobic003G350600--Sobic004G072800 Sobic001G512600 Sobic001G512600 Sobic003G350600--Sobic001G512600 Sobic003G007500 Sobic003G007500 Sobic003G350600--Sobic003G007500 Sobic008G142700 Sobic008G142700 Sobic003G350600--Sobic008G142700 Sobic003G226500 Sobic003G226500 Sobic003G350600--Sobic003G226500 Sobic001G427800 Sobic001G427800 Sobic003G350600--Sobic001G427800 Sobic009G232400 Sobic009G232400 Sobic003G350600--Sobic009G232400 Sobic003G350600--Sobic001G061700 Sobic003G350600--Sobic001G067900 Sobic010G219100--Sobic002G272600 Sobic010G219100--Sobic003G247900 Sobic008G137600 Sobic008G137600 Sobic010G219100--Sobic008G137600 Sobic010G219100--Sobic002G129000 Sobic010G219100--Sobic006G183000 Sobic010G219100--Sobic006G257001 Sobic010G193800 Sobic010G193800 Sobic010G219100--Sobic010G193800 Sobic001G152000 Sobic001G152000 Sobic010G219100--Sobic001G152000 Sobic010G219100--Sobic009G050700
Octagon: transcription factors


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