Gene annotation
Transcriptome id Sobic.006G110300.3,Sobic.006G110300.2,Sobic.006G110300.1
Synonym Sb06g019260
Functional annotation SAM domain containing protein, putative, expressed
UniProt C5YA73 , A0A1Z5RE55 , A0A1Z5RD93
Pfam PF00536
Panther DB PTHR23509 PTHR23509:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G70180 : Sterile alpha motif (SAM) domain-containing protein
RAP-DB (Rice) LOC_Os04g39090.1 : SAM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056243 , Zm00025a011085
Brachypodium -
Barley HORVU2Hr1G081180.6 , HORVU2Hr1G081180.7 , HORVU2Hr1G081180.4 , HORVU2Hr1G081180.5 , HORVU2Hr1G081180.8 , HORVU2Hr1G081180.16 , HORVU2Hr1G081180.12 , HORVU2Hr1G081180.10
Wheat TraesCS2A02G333400 , TraesCS2A02G333400 , TraesCS2B02G346700 , TraesCS2B02G346700 , TraesCS2D02G327600 , TraesCS2D02G327600 , TraesCS2D02G327600 , TraesCS2D02G327600 , TraesCS2D02G327600 , TraesCS2D02G327600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G110300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
2 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
3 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
4 Sobic.002G272600 TBC domain containing protein, expressed -
5 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
6 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
7 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
8 Sobic.001G376800 - K13116: DDX41, ATP-dependent RNA helicase DDX41
9 Sobic.008G001100 tonneau 1b, putative, expressed K16546: FGFR1 oncogene partner
10 Sobic.008G111700 expressed protein -
11 Sobic.003G420700 expressed protein -
12 Sobic.003G354100 expressed protein -
13 Sobic.002G224700 NFKB, putative, expressed -
14 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
15 Sobic.010G028300 bromodomain domain containing protein, expressed -
16 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
17 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
18 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
19 Sobic.001G056200 expressed protein -
20 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit


Gene co-expression network
sample Sobic006G110300 Sobic006G110300 Sobic005G000800 Sobic005G000800 Sobic006G110300--Sobic005G000800 Sobic001G507400 Sobic001G507400 Sobic006G110300--Sobic001G507400 Sobic010G211300 Sobic010G211300 Sobic006G110300--Sobic010G211300 Sobic002G272600 Sobic002G272600 Sobic006G110300--Sobic002G272600 Sobic004G013600 Sobic004G013600 Sobic006G110300--Sobic004G013600 Sobic003G038600 Sobic003G038600 Sobic006G110300--Sobic003G038600 Sobic006G261100 Sobic006G261100 Sobic006G110300--Sobic006G261100 Sobic001G376800 Sobic001G376800 Sobic006G110300--Sobic001G376800 Sobic008G001100 Sobic008G001100 Sobic006G110300--Sobic008G001100 Sobic005G000800--Sobic010G211300 Sobic005G000800--Sobic004G013600 Sobic005G000800--Sobic006G110300 Sobic004G305600 Sobic004G305600 Sobic005G000800--Sobic004G305600 Sobic005G000800--Sobic008G001100 Sobic004G350100 Sobic004G350100 Sobic005G000800--Sobic004G350100 Sobic005G000800--Sobic002G272600 Sobic001G028400 Sobic001G028400 Sobic005G000800--Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic005G000800--Sobic010G033400 Sobic001G038100 Sobic001G038100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic006G120800 Sobic006G120800 Sobic001G507400--Sobic006G120800 Sobic009G258400 Sobic009G258400 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000 Sobic010G211300--Sobic001G028400 Sobic010G211300--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic010G211300--Sobic006G267300 Sobic001G056200 Sobic001G056200 Sobic010G211300--Sobic001G056200 Sobic001G083600 Sobic001G083600 Sobic010G211300--Sobic001G083600 Sobic010G211300--Sobic010G033400 Sobic002G084300 Sobic002G084300 Sobic010G211300--Sobic002G084300 Sobic003G437500 Sobic003G437500 Sobic010G211300--Sobic003G437500 Sobic010G211300--Sobic005G000800 Sobic001G061700 Sobic001G061700 Sobic002G272600--Sobic001G061700 Sobic001G080000 Sobic001G080000 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic003G405700 Sobic003G405700 Sobic002G272600--Sobic003G405700 Sobic010G105600 Sobic010G105600 Sobic002G272600--Sobic010G105600 Sobic007G205000 Sobic007G205000 Sobic002G272600--Sobic007G205000 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic010G219100 Sobic010G219100 Sobic002G272600--Sobic010G219100 Sobic004G013600--Sobic001G056200 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic004G013600--Sobic010G211300 Sobic006G248500 Sobic006G248500 Sobic004G013600--Sobic006G248500 Sobic004G013600--Sobic007G205000 Sobic009G030300 Sobic009G030300 Sobic004G013600--Sobic009G030300 Sobic004G013600--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic004G013600--Sobic007G118200 Sobic008G111700 Sobic008G111700 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic003G038600--Sobic009G258400 Sobic003G247900 Sobic003G247900 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic002G276900 Sobic002G276900 Sobic006G261100--Sobic002G276900 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic006G261100--Sobic003G354100 Sobic002G034600 Sobic002G034600 Sobic001G376800--Sobic002G034600 Sobic007G056500 Sobic007G056500 Sobic001G376800--Sobic007G056500 Sobic006G121300 Sobic006G121300 Sobic001G376800--Sobic006G121300 Sobic001G473600 Sobic001G473600 Sobic001G376800--Sobic001G473600 Sobic004G059000 Sobic004G059000 Sobic001G376800--Sobic004G059000 Sobic006G017000 Sobic006G017000 Sobic001G376800--Sobic006G017000 Sobic010G028300 Sobic010G028300 Sobic001G376800--Sobic010G028300 Sobic001G395100 Sobic001G395100 Sobic001G376800--Sobic001G395100 Sobic001G131800 Sobic001G131800 Sobic001G376800--Sobic001G131800 Sobic008G001100--Sobic005G000800 Sobic001G529000 Sobic001G529000 Sobic008G001100--Sobic001G529000 Sobic008G001100--Sobic010G105600 Sobic008G001100--Sobic004G305600 Sobic008G001100--Sobic006G110300 Sobic003G124800 Sobic003G124800 Sobic008G001100--Sobic003G124800 Sobic001G439600 Sobic001G439600 Sobic008G001100--Sobic001G439600 Sobic003G101300 Sobic003G101300 Sobic008G001100--Sobic003G101300 Sobic006G257001 Sobic006G257001 Sobic008G001100--Sobic006G257001
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.