Hb_110854_010

Information

Type -
Description -
Location Contig110854: 2639-6618
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03348: 3035-3542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110854_010 0.0 - - -
2 Hb_001610_060 0.1430552238 - - hypothetical protein TRIUR3_12067 [Triticum urartu]
3 Hb_001277_420 0.1562729603 - - PREDICTED: protein lin-12-like isoform X2 [Populus euphratica]
4 Hb_001013_060 0.1577067324 - - -
5 Hb_000203_150 0.15963942 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
6 Hb_016120_020 0.1612125204 - - PREDICTED: tetrahydrocannabinolic acid synthase-like [Jatropha curcas]
7 Hb_000720_060 0.1638209017 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
8 Hb_002374_060 0.1670427611 - - amino acid transporter, putative [Ricinus communis]
9 Hb_106728_020 0.1707208349 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000032_340 0.1858825936 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
11 Hb_000510_210 0.1866302037 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
12 Hb_000002_230 0.1890656767 - - RING/U-box superfamily protein [Theobroma cacao]
13 Hb_000856_250 0.1899663661 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_000616_100 0.1904800331 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
15 Hb_000566_170 0.1926467305 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL9 homolog isoform X4 [Jatropha curcas]
16 Hb_000705_070 0.1928805826 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002122_060 0.1939245034 - - PREDICTED: putative disease resistance protein RGA4 [Beta vulgaris subsp. vulgaris]
18 Hb_186495_010 0.1986020559 - - Phosphoprotein phosphatase [Theobroma cacao]
19 Hb_010162_010 0.1994818494 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
20 Hb_002054_090 0.1997255484 - - PREDICTED: 36.4 kDa proline-rich protein-like [Gossypium raimondii]

Gene co-expression network

sample Hb_110854_010 Hb_110854_010 Hb_001610_060 Hb_001610_060 Hb_110854_010--Hb_001610_060 Hb_001277_420 Hb_001277_420 Hb_110854_010--Hb_001277_420 Hb_001013_060 Hb_001013_060 Hb_110854_010--Hb_001013_060 Hb_000203_150 Hb_000203_150 Hb_110854_010--Hb_000203_150 Hb_016120_020 Hb_016120_020 Hb_110854_010--Hb_016120_020 Hb_000720_060 Hb_000720_060 Hb_110854_010--Hb_000720_060 Hb_001610_060--Hb_000203_150 Hb_001610_060--Hb_001013_060 Hb_001610_060--Hb_000720_060 Hb_001610_060--Hb_016120_020 Hb_000032_340 Hb_000032_340 Hb_001610_060--Hb_000032_340 Hb_000856_250 Hb_000856_250 Hb_001610_060--Hb_000856_250 Hb_006550_010 Hb_006550_010 Hb_001277_420--Hb_006550_010 Hb_005695_020 Hb_005695_020 Hb_001277_420--Hb_005695_020 Hb_002894_040 Hb_002894_040 Hb_001277_420--Hb_002894_040 Hb_000002_230 Hb_000002_230 Hb_001277_420--Hb_000002_230 Hb_183209_020 Hb_183209_020 Hb_001277_420--Hb_183209_020 Hb_002053_090 Hb_002053_090 Hb_001277_420--Hb_002053_090 Hb_001013_060--Hb_000203_150 Hb_000840_220 Hb_000840_220 Hb_001013_060--Hb_000840_220 Hb_000563_570 Hb_000563_570 Hb_001013_060--Hb_000563_570 Hb_001013_060--Hb_000720_060 Hb_003582_010 Hb_003582_010 Hb_001013_060--Hb_003582_010 Hb_000203_150--Hb_000002_230 Hb_000203_150--Hb_000032_340 Hb_000203_150--Hb_000720_060 Hb_000203_150--Hb_183209_020 Hb_003504_010 Hb_003504_010 Hb_016120_020--Hb_003504_010 Hb_016120_020--Hb_000856_250 Hb_001115_010 Hb_001115_010 Hb_016120_020--Hb_001115_010 Hb_002374_060 Hb_002374_060 Hb_016120_020--Hb_002374_060 Hb_016120_020--Hb_000032_340 Hb_000069_630 Hb_000069_630 Hb_000720_060--Hb_000069_630 Hb_001775_060 Hb_001775_060 Hb_000720_060--Hb_001775_060 Hb_000720_060--Hb_016120_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.38639 0.611331 6.62808 0 0.177386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242875 0 0.163602 2.01216 0.180721

CAGE analysis