Hb_046703_010

Information

Type -
Description -
Location Contig46703: 3-1133
Sequence    

Annotation

kegg
ID tcc:TCM_026971
description Leucine-rich repeat protein kinase family protein
nr
ID XP_007022966.1
description Leucine-rich repeat protein kinase family protein [Theobroma cacao]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A061G833
description Leucine-rich repeat protein kinase family protein OS=Theobroma cacao GN=TCM_026971 PE=4 SV=1
Gene Ontology
ID GO:0016020
description leucine-rich repeat protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046703_010 0.0 - - Leucine-rich repeat protein kinase family protein [Theobroma cacao]
2 Hb_011457_170 0.1671028055 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
3 Hb_000397_070 0.196945797 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_010417_020 0.1984310575 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
5 Hb_094744_010 0.2043158679 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
6 Hb_000427_030 0.2132451669 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000157_010 0.2133611837 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
8 Hb_001388_050 0.2145081016 - - -
9 Hb_004324_350 0.2165565665 - - PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]
10 Hb_000260_060 0.2173737558 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]
11 Hb_003209_020 0.2177538247 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 10 [Jatropha curcas]
12 Hb_001488_100 0.2191129289 - - -
13 Hb_003497_030 0.2234472004 - - ADP-ribosylation factor, putative [Ricinus communis]
14 Hb_007304_040 0.2255215039 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
15 Hb_026988_020 0.2256022449 - - outward rectifying K+ channel [Hevea brasiliensis]
16 Hb_000380_180 0.2275440638 - - kinase, putative [Ricinus communis]
17 Hb_000494_100 0.2289683541 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
18 Hb_001677_110 0.2312895991 - - Protein YIPF1, putative [Ricinus communis]
19 Hb_002392_040 0.2318828844 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002498_060 0.2320141811 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_046703_010 Hb_046703_010 Hb_011457_170 Hb_011457_170 Hb_046703_010--Hb_011457_170 Hb_000397_070 Hb_000397_070 Hb_046703_010--Hb_000397_070 Hb_010417_020 Hb_010417_020 Hb_046703_010--Hb_010417_020 Hb_094744_010 Hb_094744_010 Hb_046703_010--Hb_094744_010 Hb_000427_030 Hb_000427_030 Hb_046703_010--Hb_000427_030 Hb_000157_010 Hb_000157_010 Hb_046703_010--Hb_000157_010 Hb_011457_170--Hb_010417_020 Hb_001488_100 Hb_001488_100 Hb_011457_170--Hb_001488_100 Hb_001946_320 Hb_001946_320 Hb_011457_170--Hb_001946_320 Hb_004453_140 Hb_004453_140 Hb_011457_170--Hb_004453_140 Hb_005000_290 Hb_005000_290 Hb_011457_170--Hb_005000_290 Hb_011457_170--Hb_000157_010 Hb_000291_280 Hb_000291_280 Hb_000397_070--Hb_000291_280 Hb_012340_010 Hb_012340_010 Hb_000397_070--Hb_012340_010 Hb_003893_170 Hb_003893_170 Hb_000397_070--Hb_003893_170 Hb_000997_210 Hb_000997_210 Hb_000397_070--Hb_000997_210 Hb_010638_020 Hb_010638_020 Hb_000397_070--Hb_010638_020 Hb_000397_070--Hb_000427_030 Hb_010417_020--Hb_000157_010 Hb_010417_020--Hb_094744_010 Hb_006594_020 Hb_006594_020 Hb_010417_020--Hb_006594_020 Hb_010589_040 Hb_010589_040 Hb_010417_020--Hb_010589_040 Hb_010417_020--Hb_004453_140 Hb_168501_010 Hb_168501_010 Hb_094744_010--Hb_168501_010 Hb_008066_040 Hb_008066_040 Hb_094744_010--Hb_008066_040 Hb_000012_230 Hb_000012_230 Hb_094744_010--Hb_000012_230 Hb_094744_010--Hb_011457_170 Hb_001935_030 Hb_001935_030 Hb_094744_010--Hb_001935_030 Hb_011174_070 Hb_011174_070 Hb_000427_030--Hb_011174_070 Hb_002903_070 Hb_002903_070 Hb_000427_030--Hb_002903_070 Hb_001767_010 Hb_001767_010 Hb_000427_030--Hb_001767_010 Hb_004800_160 Hb_004800_160 Hb_000427_030--Hb_004800_160 Hb_000025_480 Hb_000025_480 Hb_000427_030--Hb_000025_480 Hb_003057_120 Hb_003057_120 Hb_000427_030--Hb_003057_120 Hb_152439_020 Hb_152439_020 Hb_000157_010--Hb_152439_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_001856_020 Hb_001856_020 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0237824 0 0 0.0318781 0.0892967 0.0405969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0435679 0.0685393 0.127099 0.0137438 0

CAGE analysis