Hb_027380_080

Information

Type -
Description -
Location Contig27380: 50379-50645
Sequence    

Annotation

kegg
ID rcu:RCOM_0630180
description hypothetical protein
nr
ID KDP38006.1
description hypothetical protein JCGZ_04649 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KP48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04649 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cbl-interacting serine threonine-protein kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28595: 50451-50830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027380_080 0.0 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
2 Hb_005375_090 0.0596719729 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
3 Hb_002785_040 0.0665621725 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
4 Hb_003747_090 0.0669540027 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_002592_040 0.0684698288 - - ACC oxidase 3 [Hevea brasiliensis]
6 Hb_013405_110 0.0703893426 - - multidrug resistance pump, putative [Ricinus communis]
7 Hb_086022_020 0.0711688513 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
8 Hb_001856_240 0.0756912779 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
9 Hb_003020_120 0.077052196 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
10 Hb_000012_370 0.0780865216 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001006_160 0.0785079778 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
12 Hb_008748_050 0.0785369449 - - PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Populus euphratica]
13 Hb_004129_170 0.0790280327 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
14 Hb_176135_010 0.0801297192 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
15 Hb_000251_160 0.082814904 - - chlorophyll A/B binding protein, putative [Ricinus communis]
16 Hb_002374_480 0.0828550599 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
17 Hb_003847_070 0.0829423215 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
18 Hb_000320_370 0.0834643198 - - PREDICTED: ATP synthase gamma chain, chloroplastic [Jatropha curcas]
19 Hb_002400_200 0.0847817162 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
20 Hb_001269_480 0.0855412755 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_027380_080 Hb_027380_080 Hb_005375_090 Hb_005375_090 Hb_027380_080--Hb_005375_090 Hb_002785_040 Hb_002785_040 Hb_027380_080--Hb_002785_040 Hb_003747_090 Hb_003747_090 Hb_027380_080--Hb_003747_090 Hb_002592_040 Hb_002592_040 Hb_027380_080--Hb_002592_040 Hb_013405_110 Hb_013405_110 Hb_027380_080--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_027380_080--Hb_086022_020 Hb_005375_090--Hb_003747_090 Hb_005375_090--Hb_002785_040 Hb_005375_090--Hb_013405_110 Hb_002890_170 Hb_002890_170 Hb_005375_090--Hb_002890_170 Hb_004129_170 Hb_004129_170 Hb_005375_090--Hb_004129_170 Hb_082402_020 Hb_082402_020 Hb_005375_090--Hb_082402_020 Hb_002785_040--Hb_003747_090 Hb_002785_040--Hb_013405_110 Hb_002785_040--Hb_086022_020 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170 Hb_003747_090--Hb_002890_170 Hb_003747_090--Hb_082402_020 Hb_000948_240 Hb_000948_240 Hb_002592_040--Hb_000948_240 Hb_002592_040--Hb_013405_110 Hb_002592_040--Hb_005375_090 Hb_001006_160 Hb_001006_160 Hb_002592_040--Hb_001006_160 Hb_001862_040 Hb_001862_040 Hb_002592_040--Hb_001862_040 Hb_002592_040--Hb_003747_090 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_000251_160 Hb_000251_160 Hb_086022_020--Hb_000251_160 Hb_086022_020--Hb_004129_170 Hb_008748_050 Hb_008748_050 Hb_086022_020--Hb_008748_050 Hb_086022_020--Hb_003747_090 Hb_086022_020--Hb_005375_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.271818 19.4688 7.02677 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.5129 0 0 0.189604 41.8098

CAGE analysis