Hb_012508_040

Information

Type -
Description -
Location Contig12508: 34873-36378
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08460g
description POPTRDRAFT_560753; hypothetical protein
nr
ID XP_002309051.1
description hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HBK8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08460g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012508_040 0.0 - - hypothetical protein POPTR_0006s08460g [Populus trichocarpa]
2 Hb_017124_010 0.1180022061 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001136_110 0.1279292486 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38) isoform X1 [Jatropha curcas]
4 Hb_005918_030 0.1502118452 - - hypothetical protein JCGZ_24769 [Jatropha curcas]
5 Hb_001439_170 0.1515589353 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
6 Hb_002539_080 0.1599528009 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
7 Hb_000419_040 0.164177321 - - chorismate synthase [Hevea brasiliensis]
8 Hb_002027_300 0.1661739859 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
9 Hb_114893_020 0.1720123707 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_001863_480 0.176074268 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
11 Hb_001141_470 0.1766901623 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
12 Hb_054865_130 0.1802598547 - - acyltransferase, putative [Ricinus communis]
13 Hb_000733_070 0.1819596073 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
14 Hb_000345_030 0.1832654122 - - REF-like stress related protein 1 [Hevea brasiliensis]
15 Hb_009265_060 0.1834126927 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
16 Hb_000836_500 0.1866368819 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
17 Hb_012347_010 0.1881602393 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
18 Hb_012522_030 0.1893549935 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_080477_050 0.1894262029 - - hypothetical protein M569_16374 [Genlisea aurea]
20 Hb_171554_080 0.1895678707 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_012508_040 Hb_012508_040 Hb_017124_010 Hb_017124_010 Hb_012508_040--Hb_017124_010 Hb_001136_110 Hb_001136_110 Hb_012508_040--Hb_001136_110 Hb_005918_030 Hb_005918_030 Hb_012508_040--Hb_005918_030 Hb_001439_170 Hb_001439_170 Hb_012508_040--Hb_001439_170 Hb_002539_080 Hb_002539_080 Hb_012508_040--Hb_002539_080 Hb_000419_040 Hb_000419_040 Hb_012508_040--Hb_000419_040 Hb_004800_160 Hb_004800_160 Hb_017124_010--Hb_004800_160 Hb_001141_470 Hb_001141_470 Hb_017124_010--Hb_001141_470 Hb_005357_150 Hb_005357_150 Hb_017124_010--Hb_005357_150 Hb_000861_040 Hb_000861_040 Hb_017124_010--Hb_000861_040 Hb_017124_010--Hb_005918_030 Hb_001136_110--Hb_001439_170 Hb_006501_110 Hb_006501_110 Hb_001136_110--Hb_006501_110 Hb_002735_060 Hb_002735_060 Hb_001136_110--Hb_002735_060 Hb_000733_070 Hb_000733_070 Hb_001136_110--Hb_000733_070 Hb_000041_080 Hb_000041_080 Hb_001136_110--Hb_000041_080 Hb_005918_030--Hb_002539_080 Hb_009265_060 Hb_009265_060 Hb_005918_030--Hb_009265_060 Hb_005433_040 Hb_005433_040 Hb_005918_030--Hb_005433_040 Hb_002681_110 Hb_002681_110 Hb_005918_030--Hb_002681_110 Hb_005463_020 Hb_005463_020 Hb_005918_030--Hb_005463_020 Hb_000012_130 Hb_000012_130 Hb_001439_170--Hb_000012_130 Hb_001711_030 Hb_001711_030 Hb_001439_170--Hb_001711_030 Hb_001863_480 Hb_001863_480 Hb_001439_170--Hb_001863_480 Hb_002119_120 Hb_002119_120 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_001439_170--Hb_002539_080 Hb_002282_020 Hb_002282_020 Hb_002539_080--Hb_002282_020 Hb_002539_080--Hb_001711_030 Hb_002527_070 Hb_002527_070 Hb_002539_080--Hb_002527_070 Hb_002539_080--Hb_002735_060 Hb_002539_080--Hb_001863_480 Hb_012522_030 Hb_012522_030 Hb_000419_040--Hb_012522_030 Hb_002936_050 Hb_002936_050 Hb_000419_040--Hb_002936_050 Hb_000419_040--Hb_009265_060 Hb_000419_040--Hb_001863_480 Hb_171554_080 Hb_171554_080 Hb_000419_040--Hb_171554_080 Hb_000345_030 Hb_000345_030 Hb_000419_040--Hb_000345_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.21591 0.274709 1.7323 1.26063 3.7742 1.58113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.943 3.01152 9.32993 0.609688 0.431367

CAGE analysis