Hb_010485_020

Information

Type -
Description -
Location Contig10485: 11100-14577
Sequence    

Annotation

kegg
ID rcu:RCOM_0715010
description Protein P21, putative
nr
ID XP_012081740.1
description PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
swissprot
ID P83332
description Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1
trembl
ID A0A067KCR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18786 PE=4 SV=1
Gene Ontology
ID GO:0005576
description pathogenesis-related thaumatin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01655: 11431-12620 , PASA_asmbl_01656: 12356-14192 , PASA_asmbl_01657: 13504-14000
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010485_020 0.0 - - PREDICTED: thaumatin-like protein 1b isoform X1 [Jatropha curcas]
2 Hb_000566_200 0.0882236768 - - PREDICTED: uncharacterized protein LOC105644834 [Jatropha curcas]
3 Hb_000982_060 0.090366831 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
4 Hb_000000_270 0.0961188334 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
5 Hb_002311_180 0.0978223428 - - drought-responsive family protein [Populus trichocarpa]
6 Hb_000120_170 0.1001313307 - - selenoprotein [Populus trichocarpa]
7 Hb_135831_010 0.1013621856 - - hypothetical protein JCGZ_13374 [Jatropha curcas]
8 Hb_000930_030 0.1027372914 - - PREDICTED: uncharacterized protein LOC105629651 [Jatropha curcas]
9 Hb_004586_300 0.1029639142 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
10 Hb_000442_150 0.1035195026 - - PREDICTED: uncharacterized protein LOC105649224 [Jatropha curcas]
11 Hb_002876_320 0.1060410879 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
12 Hb_003893_030 0.1066520682 - - Protein yrdA, putative [Ricinus communis]
13 Hb_000683_070 0.106660035 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
14 Hb_014497_050 0.1083662013 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
15 Hb_001541_230 0.1117530437 - - unnamed protein product [Vitis vinifera]
16 Hb_002739_020 0.1122333757 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
17 Hb_000227_090 0.1152387006 - - PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Jatropha curcas]
18 Hb_003549_150 0.1177516045 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
19 Hb_006816_350 0.1178718886 - - PREDICTED: syntaxin-43 [Jatropha curcas]
20 Hb_002828_020 0.1180249423 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010485_020 Hb_010485_020 Hb_000566_200 Hb_000566_200 Hb_010485_020--Hb_000566_200 Hb_000982_060 Hb_000982_060 Hb_010485_020--Hb_000982_060 Hb_000000_270 Hb_000000_270 Hb_010485_020--Hb_000000_270 Hb_002311_180 Hb_002311_180 Hb_010485_020--Hb_002311_180 Hb_000120_170 Hb_000120_170 Hb_010485_020--Hb_000120_170 Hb_135831_010 Hb_135831_010 Hb_010485_020--Hb_135831_010 Hb_000566_200--Hb_002311_180 Hb_000915_180 Hb_000915_180 Hb_000566_200--Hb_000915_180 Hb_000340_420 Hb_000340_420 Hb_000566_200--Hb_000340_420 Hb_007416_300 Hb_007416_300 Hb_000566_200--Hb_007416_300 Hb_002876_320 Hb_002876_320 Hb_000566_200--Hb_002876_320 Hb_000982_060--Hb_135831_010 Hb_000982_060--Hb_000000_270 Hb_000442_150 Hb_000442_150 Hb_000982_060--Hb_000442_150 Hb_003893_030 Hb_003893_030 Hb_000982_060--Hb_003893_030 Hb_001135_130 Hb_001135_130 Hb_000982_060--Hb_001135_130 Hb_000683_070 Hb_000683_070 Hb_000982_060--Hb_000683_070 Hb_000366_120 Hb_000366_120 Hb_000000_270--Hb_000366_120 Hb_000562_090 Hb_000562_090 Hb_000000_270--Hb_000562_090 Hb_001541_230 Hb_001541_230 Hb_000000_270--Hb_001541_230 Hb_028962_020 Hb_028962_020 Hb_000000_270--Hb_028962_020 Hb_000886_050 Hb_000886_050 Hb_000000_270--Hb_000886_050 Hb_005730_120 Hb_005730_120 Hb_002311_180--Hb_005730_120 Hb_005271_220 Hb_005271_220 Hb_002311_180--Hb_005271_220 Hb_002311_180--Hb_007416_300 Hb_002872_030 Hb_002872_030 Hb_002311_180--Hb_002872_030 Hb_007885_060 Hb_007885_060 Hb_002311_180--Hb_007885_060 Hb_021576_100 Hb_021576_100 Hb_002311_180--Hb_021576_100 Hb_003549_150 Hb_003549_150 Hb_000120_170--Hb_003549_150 Hb_013738_020 Hb_013738_020 Hb_000120_170--Hb_013738_020 Hb_000076_160 Hb_000076_160 Hb_000120_170--Hb_000076_160 Hb_000227_090 Hb_000227_090 Hb_000120_170--Hb_000227_090 Hb_000928_220 Hb_000928_220 Hb_000120_170--Hb_000928_220 Hb_000009_400 Hb_000009_400 Hb_000120_170--Hb_000009_400 Hb_135831_010--Hb_000120_170 Hb_135831_010--Hb_003549_150 Hb_135831_010--Hb_002876_320 Hb_135831_010--Hb_007416_300 Hb_135831_010--Hb_000009_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.45549 7.36734 6.78153 9.41307 7.31916 6.02929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.843 4.18085 5.39123 3.87994 3.60221

CAGE analysis