Hb_009158_020

Information

Type -
Description -
Location Contig9158: 22895-26882
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17670g
description POPTRDRAFT_755443; hypothetical protein
nr
ID XP_012083131.1
description PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
swissprot
ID Q9FZ45
description Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1
trembl
ID A0A067JX28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14208 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62256: 25504-26875 , PASA_asmbl_62257: 25894-26242 , PASA_asmbl_62258: 26916-27118 , PASA_asmbl_62259: 27764-29072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009158_020 0.0 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
2 Hb_000160_180 0.1421908243 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
3 Hb_024714_050 0.1457905439 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
4 Hb_003125_190 0.1509562984 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
5 Hb_004055_070 0.1532221177 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
6 Hb_021576_030 0.157583261 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
7 Hb_004125_040 0.1596630729 - - -
8 Hb_011330_020 0.1602273304 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
9 Hb_007576_170 0.1674751843 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003077_020 0.1684848812 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_002540_080 0.170476304 - - cysteine-type peptidase, putative [Ricinus communis]
12 Hb_000877_080 0.1711891255 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
13 Hb_004846_090 0.1716285817 transcription factor TF Family: HMG HMG-box DNA-binding family protein isoform 1 [Theobroma cacao]
14 Hb_131181_010 0.1721189013 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
15 Hb_002713_080 0.1722569969 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_001318_260 0.1724165657 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
17 Hb_000272_140 0.1726287947 - - Protein bem46, putative [Ricinus communis]
18 Hb_018133_020 0.1730757437 - - transporter, putative [Ricinus communis]
19 Hb_003050_280 0.1744236931 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
20 Hb_004157_020 0.1752928149 - - PREDICTED: histone H2B-like [Gossypium raimondii]

Gene co-expression network

sample Hb_009158_020 Hb_009158_020 Hb_000160_180 Hb_000160_180 Hb_009158_020--Hb_000160_180 Hb_024714_050 Hb_024714_050 Hb_009158_020--Hb_024714_050 Hb_003125_190 Hb_003125_190 Hb_009158_020--Hb_003125_190 Hb_004055_070 Hb_004055_070 Hb_009158_020--Hb_004055_070 Hb_021576_030 Hb_021576_030 Hb_009158_020--Hb_021576_030 Hb_004125_040 Hb_004125_040 Hb_009158_020--Hb_004125_040 Hb_131181_010 Hb_131181_010 Hb_000160_180--Hb_131181_010 Hb_002540_080 Hb_002540_080 Hb_000160_180--Hb_002540_080 Hb_001318_260 Hb_001318_260 Hb_000160_180--Hb_001318_260 Hb_018133_020 Hb_018133_020 Hb_000160_180--Hb_018133_020 Hb_001279_080 Hb_001279_080 Hb_000160_180--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_000160_180--Hb_026053_020 Hb_000320_180 Hb_000320_180 Hb_024714_050--Hb_000320_180 Hb_004846_090 Hb_004846_090 Hb_024714_050--Hb_004846_090 Hb_003349_080 Hb_003349_080 Hb_024714_050--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_024714_050--Hb_000318_160 Hb_003336_030 Hb_003336_030 Hb_024714_050--Hb_003336_030 Hb_003050_280 Hb_003050_280 Hb_024714_050--Hb_003050_280 Hb_003607_050 Hb_003607_050 Hb_003125_190--Hb_003607_050 Hb_003683_110 Hb_003683_110 Hb_003125_190--Hb_003683_110 Hb_000887_020 Hb_000887_020 Hb_003125_190--Hb_000887_020 Hb_010106_010 Hb_010106_010 Hb_003125_190--Hb_010106_010 Hb_139518_030 Hb_139518_030 Hb_003125_190--Hb_139518_030 Hb_000996_140 Hb_000996_140 Hb_003125_190--Hb_000996_140 Hb_006541_010 Hb_006541_010 Hb_004055_070--Hb_006541_010 Hb_007576_170 Hb_007576_170 Hb_004055_070--Hb_007576_170 Hb_002000_140 Hb_002000_140 Hb_004055_070--Hb_002000_140 Hb_004055_070--Hb_000996_140 Hb_004899_370 Hb_004899_370 Hb_004055_070--Hb_004899_370 Hb_009182_010 Hb_009182_010 Hb_004055_070--Hb_009182_010 Hb_021576_030--Hb_004125_040 Hb_087749_010 Hb_087749_010 Hb_021576_030--Hb_087749_010 Hb_001491_010 Hb_001491_010 Hb_021576_030--Hb_001491_010 Hb_005847_060 Hb_005847_060 Hb_021576_030--Hb_005847_060 Hb_002613_020 Hb_002613_020 Hb_021576_030--Hb_002613_020 Hb_004871_040 Hb_004871_040 Hb_021576_030--Hb_004871_040 Hb_003050_250 Hb_003050_250 Hb_004125_040--Hb_003050_250 Hb_004125_040--Hb_003050_280 Hb_004125_040--Hb_001491_010 Hb_019113_020 Hb_019113_020 Hb_004125_040--Hb_019113_020 Hb_004125_040--Hb_007576_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47609 0.968909 8.84612 3.62645 1.91749 7.96912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.6561 13.904 5.134 1.17538 6.94135

CAGE analysis