Hb_008322_010

Information

Type -
Description -
Location Contig8322: 293-1380
Sequence    

Annotation

kegg
ID rcu:RCOM_1611350
description DNA repair and recombination protein radA, putative
nr
ID XP_012083596.1
description PREDICTED: DNA repair protein RAD51 homolog 3 [Jatropha curcas]
swissprot
ID Q8GXF0
description DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2
trembl
ID B9RDA0
description DNA repair and recombination protein radA, putative OS=Ricinus communis GN=RCOM_1611350 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna repair protein rad51 homolog 3 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008322_010 0.0 - - PREDICTED: DNA repair protein RAD51 homolog 3 [Jatropha curcas]
2 Hb_150986_010 0.1212102286 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000933_090 0.1228243105 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
4 Hb_007044_080 0.1235990744 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
5 Hb_003813_130 0.1288080939 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
6 Hb_001199_020 0.1314576425 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
7 Hb_002027_070 0.1334001416 - - Auxin-binding protein T85 precursor, putative [Ricinus communis]
8 Hb_006114_030 0.1337420938 transcription factor TF Family: SET hypothetical protein CISIN_1g011639mg [Citrus sinensis]
9 Hb_000028_220 0.1344582081 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
10 Hb_004117_130 0.1354400475 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
11 Hb_000014_150 0.135525889 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
12 Hb_000429_200 0.1360512366 - - PREDICTED: DNA-binding protein SMUBP-2 [Jatropha curcas]
13 Hb_000627_230 0.136710326 - - Uracil phosphoribosyltransferase, putative [Ricinus communis]
14 Hb_027472_150 0.138923231 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 10 [Jatropha curcas]
15 Hb_000260_170 0.1404359108 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
16 Hb_000058_100 0.1426070987 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
17 Hb_011930_160 0.1427257003 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
18 Hb_001502_070 0.1442987521 - - X-linked inhibitor of apoptosis protein, xiap, putative [Ricinus communis]
19 Hb_103012_010 0.1452949915 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
20 Hb_001946_010 0.1454521715 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_008322_010 Hb_008322_010 Hb_150986_010 Hb_150986_010 Hb_008322_010--Hb_150986_010 Hb_000933_090 Hb_000933_090 Hb_008322_010--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_008322_010--Hb_007044_080 Hb_003813_130 Hb_003813_130 Hb_008322_010--Hb_003813_130 Hb_001199_020 Hb_001199_020 Hb_008322_010--Hb_001199_020 Hb_002027_070 Hb_002027_070 Hb_008322_010--Hb_002027_070 Hb_001454_130 Hb_001454_130 Hb_150986_010--Hb_001454_130 Hb_011930_160 Hb_011930_160 Hb_150986_010--Hb_011930_160 Hb_000300_050 Hb_000300_050 Hb_150986_010--Hb_000300_050 Hb_000789_310 Hb_000789_310 Hb_150986_010--Hb_000789_310 Hb_000120_060 Hb_000120_060 Hb_150986_010--Hb_000120_060 Hb_103012_010 Hb_103012_010 Hb_150986_010--Hb_103012_010 Hb_000933_090--Hb_007044_080 Hb_004117_130 Hb_004117_130 Hb_000933_090--Hb_004117_130 Hb_004837_190 Hb_004837_190 Hb_000933_090--Hb_004837_190 Hb_000051_070 Hb_000051_070 Hb_000933_090--Hb_000051_070 Hb_001369_420 Hb_001369_420 Hb_000933_090--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000933_090--Hb_000358_150 Hb_007044_080--Hb_004117_130 Hb_000429_200 Hb_000429_200 Hb_007044_080--Hb_000429_200 Hb_000023_220 Hb_000023_220 Hb_007044_080--Hb_000023_220 Hb_028390_010 Hb_028390_010 Hb_007044_080--Hb_028390_010 Hb_007044_080--Hb_001199_020 Hb_006827_020 Hb_006827_020 Hb_003813_130--Hb_006827_020 Hb_003813_130--Hb_011930_160 Hb_003813_130--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_003813_130--Hb_001946_010 Hb_000523_050 Hb_000523_050 Hb_003813_130--Hb_000523_050 Hb_004055_030 Hb_004055_030 Hb_003813_130--Hb_004055_030 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001006_140 Hb_001006_140 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_007441_120 Hb_007441_120 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_001199_020--Hb_004055_030 Hb_007317_180 Hb_007317_180 Hb_002027_070--Hb_007317_180 Hb_004970_110 Hb_004970_110 Hb_002027_070--Hb_004970_110 Hb_027472_150 Hb_027472_150 Hb_002027_070--Hb_027472_150 Hb_006114_030 Hb_006114_030 Hb_002027_070--Hb_006114_030 Hb_003673_060 Hb_003673_060 Hb_002027_070--Hb_003673_060 Hb_000500_090 Hb_000500_090 Hb_002027_070--Hb_000500_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10612 1.55289 1.62566 2.97613 7.18637 5.00932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.16632 1.99811 3.13209 3.03472 2.42302

CAGE analysis