Hb_007439_010

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig7439: 2861-4587
Sequence    

Annotation

kegg
ID pop:POPTR_0006s25060g
description POPTRDRAFT_561710; hypothetical protein
nr
ID XP_011019548.1
description PREDICTED: transcription factor RAX2-like [Populus euphratica]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9HE03
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s25060g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor rax2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56575: 4169-4447
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007439_010 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
2 Hb_107201_010 0.2269982719 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_005000_310 0.2336292466 - - PREDICTED: uncharacterized protein LOC105637900 [Jatropha curcas]
4 Hb_000471_080 0.2356793919 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
5 Hb_002311_240 0.2362500907 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
6 Hb_010647_010 0.2391615273 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
7 Hb_002918_230 0.2435365493 - - PREDICTED: probable glutathione S-transferase [Gossypium raimondii]
8 Hb_000675_060 0.2512812895 - - cytochrome P450, putative [Ricinus communis]
9 Hb_000140_190 0.2521053712 - - acc synthase, putative [Ricinus communis]
10 Hb_012239_080 0.2574775889 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like [Jatropha curcas]
11 Hb_002233_040 0.2583242352 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
12 Hb_003947_040 0.2616593109 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
13 Hb_000975_150 0.2650869887 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
14 Hb_029510_110 0.2680209599 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
15 Hb_000614_180 0.2711670409 - - -
16 Hb_061195_010 0.2732631479 - - Galactose oxidase precursor, putative [Ricinus communis]
17 Hb_003636_070 0.2748716626 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001366_250 0.2761161164 - - PREDICTED: mannan endo-1,4-beta-mannosidase 4-like [Jatropha curcas]
19 Hb_003096_050 0.2781921192 - - conserved hypothetical protein [Ricinus communis]
20 Hb_158092_060 0.2786425788 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007439_010 Hb_007439_010 Hb_107201_010 Hb_107201_010 Hb_007439_010--Hb_107201_010 Hb_005000_310 Hb_005000_310 Hb_007439_010--Hb_005000_310 Hb_000471_080 Hb_000471_080 Hb_007439_010--Hb_000471_080 Hb_002311_240 Hb_002311_240 Hb_007439_010--Hb_002311_240 Hb_010647_010 Hb_010647_010 Hb_007439_010--Hb_010647_010 Hb_002918_230 Hb_002918_230 Hb_007439_010--Hb_002918_230 Hb_000140_190 Hb_000140_190 Hb_107201_010--Hb_000140_190 Hb_029510_110 Hb_029510_110 Hb_107201_010--Hb_029510_110 Hb_001004_100 Hb_001004_100 Hb_107201_010--Hb_001004_100 Hb_061195_010 Hb_061195_010 Hb_107201_010--Hb_061195_010 Hb_012239_080 Hb_012239_080 Hb_107201_010--Hb_012239_080 Hb_107201_010--Hb_000471_080 Hb_000019_220 Hb_000019_220 Hb_005000_310--Hb_000019_220 Hb_000614_180 Hb_000614_180 Hb_005000_310--Hb_000614_180 Hb_001366_250 Hb_001366_250 Hb_005000_310--Hb_001366_250 Hb_000045_230 Hb_000045_230 Hb_005000_310--Hb_000045_230 Hb_005000_310--Hb_002311_240 Hb_003057_080 Hb_003057_080 Hb_005000_310--Hb_003057_080 Hb_000471_080--Hb_029510_110 Hb_000471_080--Hb_000614_180 Hb_000471_080--Hb_001366_250 Hb_000471_080--Hb_005000_310 Hb_158092_060 Hb_158092_060 Hb_000471_080--Hb_158092_060 Hb_000471_080--Hb_000140_190 Hb_002311_240--Hb_010647_010 Hb_002311_240--Hb_000019_220 Hb_001250_140 Hb_001250_140 Hb_002311_240--Hb_001250_140 Hb_002311_240--Hb_003057_080 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550 Hb_010647_010--Hb_000019_220 Hb_012707_050 Hb_012707_050 Hb_010647_010--Hb_012707_050 Hb_010647_010--Hb_001250_140 Hb_073171_020 Hb_073171_020 Hb_010647_010--Hb_073171_020 Hb_000213_130 Hb_000213_130 Hb_010647_010--Hb_000213_130 Hb_001355_130 Hb_001355_130 Hb_002918_230--Hb_001355_130 Hb_004800_170 Hb_004800_170 Hb_002918_230--Hb_004800_170 Hb_003096_050 Hb_003096_050 Hb_002918_230--Hb_003096_050 Hb_000056_330 Hb_000056_330 Hb_002918_230--Hb_000056_330 Hb_001190_060 Hb_001190_060 Hb_002918_230--Hb_001190_060 Hb_000975_150 Hb_000975_150 Hb_002918_230--Hb_000975_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0444097 0.21667 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.270201 0.212271 0 1.98625 0.19824

CAGE analysis