Hb_073171_020

Information

Type -
Description -
Location Contig73171: 21287-28777
Sequence    

Annotation

kegg
ID rcu:RCOM_1489990
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012069090.1
description PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
swissprot
ID Q94A18
description ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2
trembl
ID B9RQF0
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_1489990 PE=4 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_020 0.0 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
2 Hb_000487_150 0.1156446731 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
3 Hb_002173_080 0.1170791128 - - alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_039562_010 0.1255063213 - - PREDICTED: protein SRG1-like [Jatropha curcas]
5 Hb_000318_440 0.1298818173 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
6 Hb_000466_090 0.1394186885 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
7 Hb_006620_040 0.141101013 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
8 Hb_003189_030 0.1417604069 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
9 Hb_004693_010 0.1430989502 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
10 Hb_000712_060 0.1436472437 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
11 Hb_003237_040 0.147951262 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_000221_200 0.1484756074 - - hypothetical protein JCGZ_15819 [Jatropha curcas]
13 Hb_012707_050 0.1515285346 - - hypothetical protein RCOM_1341590 [Ricinus communis]
14 Hb_004097_080 0.1537868436 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
15 Hb_003968_020 0.1546239322 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
16 Hb_010647_010 0.1555487939 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
17 Hb_058620_010 0.1561299464 - - cytochrome P450, putative [Ricinus communis]
18 Hb_007532_050 0.1564476255 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
19 Hb_005120_010 0.1568544347 - - amino acid transporter, putative [Ricinus communis]
20 Hb_003090_070 0.1581081266 - - PREDICTED: laccase-7 [Jatropha curcas]

Gene co-expression network

sample Hb_073171_020 Hb_073171_020 Hb_000487_150 Hb_000487_150 Hb_073171_020--Hb_000487_150 Hb_002173_080 Hb_002173_080 Hb_073171_020--Hb_002173_080 Hb_039562_010 Hb_039562_010 Hb_073171_020--Hb_039562_010 Hb_000318_440 Hb_000318_440 Hb_073171_020--Hb_000318_440 Hb_000466_090 Hb_000466_090 Hb_073171_020--Hb_000466_090 Hb_006620_040 Hb_006620_040 Hb_073171_020--Hb_006620_040 Hb_000487_150--Hb_000318_440 Hb_012532_020 Hb_012532_020 Hb_000487_150--Hb_012532_020 Hb_000127_250 Hb_000127_250 Hb_000487_150--Hb_000127_250 Hb_000487_150--Hb_002173_080 Hb_000059_100 Hb_000059_100 Hb_000487_150--Hb_000059_100 Hb_000487_150--Hb_039562_010 Hb_002173_080--Hb_039562_010 Hb_003189_030 Hb_003189_030 Hb_002173_080--Hb_003189_030 Hb_003237_040 Hb_003237_040 Hb_002173_080--Hb_003237_040 Hb_002173_080--Hb_000318_440 Hb_004097_080 Hb_004097_080 Hb_002173_080--Hb_004097_080 Hb_039562_010--Hb_000318_440 Hb_003968_020 Hb_003968_020 Hb_039562_010--Hb_003968_020 Hb_004693_010 Hb_004693_010 Hb_039562_010--Hb_004693_010 Hb_135392_010 Hb_135392_010 Hb_039562_010--Hb_135392_010 Hb_039562_010--Hb_004097_080 Hb_000318_440--Hb_004693_010 Hb_000318_440--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_000318_440--Hb_007532_050 Hb_002805_230 Hb_002805_230 Hb_000318_440--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_000318_440--Hb_003090_070 Hb_000466_090--Hb_003189_030 Hb_000466_090--Hb_006620_040 Hb_000466_090--Hb_002173_080 Hb_000659_010 Hb_000659_010 Hb_000466_090--Hb_000659_010 Hb_000466_090--Hb_000487_150 Hb_001003_020 Hb_001003_020 Hb_000466_090--Hb_001003_020 Hb_006620_040--Hb_003968_020 Hb_006620_040--Hb_039562_010 Hb_023080_010 Hb_023080_010 Hb_006620_040--Hb_023080_010 Hb_006620_040--Hb_003189_030 Hb_000907_190 Hb_000907_190 Hb_006620_040--Hb_000907_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0075566 0.0124132 0.043465 0.133198 0.0037802 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0171073 0.00673167 0.0648049 3.61496 0.159115

CAGE analysis