Hb_006535_010

Information

Type -
Description -
Location Contig6535: 7564-7951
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006535_010 0.0 - - -
2 Hb_000445_240 0.2433372757 - - conserved hypothetical protein [Ricinus communis]
3 Hb_172179_010 0.2580558326 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
4 Hb_007140_010 0.2582441762 - - -
5 Hb_033594_010 0.26570459 - - -
6 Hb_114146_010 0.2739865745 - - hypothetical protein JCGZ_15608 [Jatropha curcas]
7 Hb_002791_040 0.3122461968 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
8 Hb_001190_050 0.3128979313 - - hypothetical protein JCGZ_20709 [Jatropha curcas]
9 Hb_000696_020 0.3173025885 - - hypothetical protein JCGZ_25344 [Jatropha curcas]
10 Hb_024898_020 0.3498270711 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_005305_190 0.3593172356 transcription factor TF Family: NAC -
12 Hb_001410_050 0.3595737361 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_005946_180 0.3598920888 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
14 Hb_006355_120 0.3603759841 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000139_210 0.3613418973 - - -
16 Hb_000264_330 0.3618201783 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
17 Hb_005779_070 0.3621255777 - - -
18 Hb_004970_080 0.3635551643 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
19 Hb_002259_180 0.3637704453 - - -
20 Hb_001950_130 0.3640476842 - - -

Gene co-expression network

sample Hb_006535_010 Hb_006535_010 Hb_000445_240 Hb_000445_240 Hb_006535_010--Hb_000445_240 Hb_172179_010 Hb_172179_010 Hb_006535_010--Hb_172179_010 Hb_007140_010 Hb_007140_010 Hb_006535_010--Hb_007140_010 Hb_033594_010 Hb_033594_010 Hb_006535_010--Hb_033594_010 Hb_114146_010 Hb_114146_010 Hb_006535_010--Hb_114146_010 Hb_002791_040 Hb_002791_040 Hb_006535_010--Hb_002791_040 Hb_000445_240--Hb_114146_010 Hb_005305_190 Hb_005305_190 Hb_000445_240--Hb_005305_190 Hb_008221_120 Hb_008221_120 Hb_000445_240--Hb_008221_120 Hb_005779_070 Hb_005779_070 Hb_000445_240--Hb_005779_070 Hb_005952_020 Hb_005952_020 Hb_000445_240--Hb_005952_020 Hb_172179_010--Hb_007140_010 Hb_172179_010--Hb_005779_070 Hb_172179_010--Hb_005952_020 Hb_172179_010--Hb_114146_010 Hb_010589_100 Hb_010589_100 Hb_172179_010--Hb_010589_100 Hb_172179_010--Hb_005305_190 Hb_007140_010--Hb_005779_070 Hb_007140_010--Hb_005952_020 Hb_007140_010--Hb_114146_010 Hb_007140_010--Hb_010589_100 Hb_007140_010--Hb_005305_190 Hb_001994_010 Hb_001994_010 Hb_033594_010--Hb_001994_010 Hb_005389_130 Hb_005389_130 Hb_033594_010--Hb_005389_130 Hb_074683_010 Hb_074683_010 Hb_033594_010--Hb_074683_010 Hb_002027_370 Hb_002027_370 Hb_033594_010--Hb_002027_370 Hb_017214_050 Hb_017214_050 Hb_033594_010--Hb_017214_050 Hb_114146_010--Hb_005305_190 Hb_000752_030 Hb_000752_030 Hb_114146_010--Hb_000752_030 Hb_010534_030 Hb_010534_030 Hb_114146_010--Hb_010534_030 Hb_001190_050 Hb_001190_050 Hb_002791_040--Hb_001190_050 Hb_008014_060 Hb_008014_060 Hb_002791_040--Hb_008014_060 Hb_003626_010 Hb_003626_010 Hb_002791_040--Hb_003626_010 Hb_000069_580 Hb_000069_580 Hb_002791_040--Hb_000069_580 Hb_008221_020 Hb_008221_020 Hb_002791_040--Hb_008221_020 Hb_002435_020 Hb_002435_020 Hb_002791_040--Hb_002435_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.122286 0 0.297421 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.458839 0 0.103577 0

CAGE analysis